Detailed information on CNT0001406 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001406

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.40000.1911.1980.750.8791.3711.410.3410.5581.4460.5490leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.41.51.6

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEPLRIEKQKCFFIIKKSIWYLKKSRRKRCGSCF*

>peptide 2 (61 aa)
MLIYQNQSVCRRLINQVKNCMRWKLNKPFGQTSRDRSFCPNPTAVSTTSRPKTVCNAIISM*

>peptide 3 (65 aa)
MQTQCLAFSLQLIHHSDRNHLKSDTFTASCLINSCGVSSIHFNRDNLKNPGRPNVVLDLLKNPFA*

>peptide 4 (45 aa)
MVPTFLIGRSSFSSYYTNTTHLSYWVLCCNANTMPRFFSSTHSSF*

>peptide 5 (46 aa)
MLFLIFSRTLLPKLKFFRSIGVSNTDMPKILLRNHVILMSKENGTS*

Sequence

>CNT0001406
TCCCAGCCTGTACATGTTAACAAGTGAAGTATAAAAGAATGGAATTCCCAACGTCATAGAATAAATGCTAATATATCAGAATCAGTCAGTTTGCAGAAGG
CTCATAAACCAAGTTAAAAATTGCATGAGATGGAAATTGAACAAACCCTTTGGCCAGACTTCACGAGACAGATCCTTTTGTCCAAACCCCACAGCGGTTT
CAACAACTAGCCGACCAAAAACAGTGTGCAACGCAATAATCTCAATGTAAGAGACTAAATGGTGCCTACTTTTCTCATCGGAAGATCATCATTCTCAAGT
TACTACACTAATACTACCCATTTATCGTATTGGGTTCTTTGCTGCAATGCAAACACAATGCCTCGCTTTTTCTCTTCAACTCATTCATCATTCTGATAGA
AACCATCTTAAAAGTGACACCTTTACAGCGTCTTGCCTCATCAACTCATGTGGGGTGTCCTCAATACACTTCAACAGGGACAATTTGAAAAACCCAGGTC
GCCCAAATGTTGTTCTTGATCTTCTCAAGAACCCTTTTGCCTAAACTCAAGTTCTTCCGTTCTATTGGGGTTTCCAACACTGACATGCCTAAGATCCTAC
TTCGTAACCATGTTATATTGATGAGTAAGGAAAATGGAACCTCTTAGGATTGAGAAGCAAAAATGTTTTTTTATTATTAAAAAAAGCATATGGTACCTGA
AGAAATCAAGGAGAAAACGTTGCGGAAGTTGCTTCTAAGCTAT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G40780.1 Uncharacterized protein protein coding CNT0001406 822 297 UTR5 Cis