Detailed information on CNT0001415 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001415

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNSSSLPRLALEIFVLFCFLVSRIFEKSSE*

>peptide 2 (29 aa)
ESYSWRVGLMVVGLRVLTAVGSVDAAGGC*

Sequence

>CNT0001415
GAATCTTACAGTTGGAGAGTGGGTTTGATGGTAGTGGGGTTGAGGGTGCTCACTGCTGTGGGCAGTGTTGACGCTGCTGGAGGTTGTTGAATCCATGAAT
TCTTCTTCATTGCCAAGGCTTGCCCTGGAAATATTTGTCTTGTTCTGCTTCCTAGTTTCCCGGATCTTTGAGAAATCAAGTGAGTAGTCCGGCACTTGGC
CCTTCTGATCCCAGTCCCCAAATTGCGGCACCGATAACCATGGAGCATTTTTCTATGTATGTGGATAAGATTTACATTTTAAAACTTAGTCAGCTAATCA
CAGTAATTAAGGGTTCTTAATATATAATGAACTTAATATTAATTACAATGTAGTATACAAAACAAAATGTAATTGAAAGATTTAAAAGAGAGGGGATATT
ATTAGTATTACTTATCACCTGTCTTAGACTGCACAGTAAAATTTTACCAACTATAAAGGAAACGCGGAAAAGGAACGAATCTAGGGACGAATTTGACTAT
TTCTTTGCTTTAGAAATTAAGGAGTTATGATTATTTGTACGACTGTAACACTGTCATCAACGTTTCAAAGCAATCCAGGTTCCTTCGAGGTTAAAAACAA
ATCGTAGAGAATCCCCATCCTTTTAAAAAGTTTACATAAAACAAGAAAATGTAATAGTAAAACAAAATTAAATTTAACAATCATAATTAAGGCGAGCTGG
AAAGGGGAGCGCATGAATAATCATGTTACCCGTGTCTCCGTTTTAACCGATTGAAGAAATACAACAATCTCTGCAGATGCACGTTGAATAACAGCTGGTA
TTACTTAATGACCAAAATTAAATATTAAATCAAACGAGAAACAGATTATGGATTTTGAAGGCGGATAAAACATGCAATTCTTTAGATGATTTTGTAGTCT
TCTCAGATTAATTAAGATTAGAGTACGTTTCACCTTTAACAAAGAGAATAGAACCAAAAGCAGGTAAATAATAGCATGTAAGATTTTCGTCCTTTAAACT
ATGTTAACCGGTAGTTAATCTGCTTAAATCATATCTCCAAGCTACTACCTAGCTAACACCAAGTTTTCAAACAACCGTTTAACAATATAAATATATATAT
ATAAGATATCGGTTTCACAATTAAAAGAGAAGAAGACTCTGCTCTCTCTGTTTCTGGTTCATGTGCTTCAACAAGTAGCATGCAATTTAATCTCCAGATT
TGTGATCTAGCTAATTTCAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G15010.2 Uncharacterized protein protein coding CNT0001415 1390 502 CDS Cis