Detailed information on CNT0001423 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001423

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LRRPLSSPQKLRYYSIDLNFVTTHAPPSTVYDCQVSRRIQPPLCLM*

Sequence

>CNT0001423
CGCTGCGCCGCCCCTTATCGTCACCACAAAAACTAAGATACTACTCAATAGATCTTAACTTCGTAACCACTCACGCGCCGCCGTCAACCGTCTACGACTG
CCAGGTTAGTAGAAGAATACAACCACCACTTTGTCTTATGTAAGTCGTTGGTATTATTGTAAAAATTCTTATTAAACTTGTTATTTATGATGATTTGTTA
TTAGATAATTGTGTAAAAATATTTTACATTTACTCTTCTAACCAAGCACACCGTACCCTTGGAAGGTTCTTGAAGACCATACAGCCACTTCAAATTTCTC
AAAGCAGAAGTTCAGAAACTCAAGATAAAAAGGTCTCTTGAACACTGAAATGAAACACAACCCCATTAGTAAAGAATGCATAAGGCACAACCTCATAGTA
TAGAAAAGTAGAATAACACAGTTGTTTCTCACTTGCTTTCCTTCCTATGATTGCATCTGCTTTACAGTACTTTGGAGGGGGAGAAACCATGTCCACAAGC
AGCCCA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G27201.1 Uncharacterized protein protein coding CNT0001423 1400 505 CDS Cis
GLYMA18G50410.2 Uncharacterized protein protein coding CNT0001423 512 243 CDS Trans
GLYMA18G50410.3 Uncharacterized protein protein coding CNT0001423 512 243 CDS Trans
GLYMA18G50410.4 Uncharacterized protein protein coding CNT0001423 512 243 CDS Trans