Detailed information on CNT0001429 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001429

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.1181.833.6063.5620.7771.9513.361.0022.2345.2322.362.2743.1423.5752.168leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.5

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MVNSEILFEYWVVSISFIVEAYWTKLYVVFLHFSVSLAKTQ*

>peptide 2 (41 aa)
MLWMLCHWGTMQFQQYHLNLLHPCTRMTSKHLVKNSFTTTL*

>peptide 3 (34 aa)
MVLYSCCTSFISCTYFWSIATDIEQFFRPSKRRE*

>peptide 4 (33 aa)
MLLFSRLLHMLMPQGKPVVQQNWNLALFCVANQ*

Sequence

>CNT0001429
CACTCTCCAATTATCTATTCTAATTTATAATATAGGTGTATATATATACTCTTGTTGCTACTTTTCATCTAGCATCAAACTGTAAATGGATATTCTATTT
CTTCAATGGTCCTGTACTCCTGTTGCACTTCATTCATTAGTTGTACATATTTTTGGAGCATAGCTACTGACATTGAGCAATTTTTTAGGCCCTCCAAAAG
GAGAGAGTAATTATGAAGCTGCAGAGTTTGATCCTATTGTGCATCACAATCAATGTTGCCCTTGGGTGAATGGCAATGTTGCTGCTGCTGGCTGTGCTAG
TTCTGTTCCAAGTAGTGATGCAATTGCCCTCAGTGTTTGGCAGCTGACGATAGATGCTTTGGATGCTTTGTCACTGGGGCACAATGCAATTCCAACAGTA
CCATCTGAATCTGCTGCATCCTTGTACAAGAATGACCAGCAAGCACCTGGTCAAAAACTCTTTCACAACCACTCTATGAGCTGAAGCCATGGTCAACTCT
GAGATTTTGTTTGAGTATTGGGTAGTTTCCATTTCCTTCATTGTAGAGGCGTATTGGACCAAGCTATACGTGGTATTCTTGCATTTTTCAGTTTCCCTTG
CTAAAACTCAGTGAGATTGTAGCAGAAATGTTACTTTTCTCCCGGCTTTTGCACATGCTAATGCCACAAGGGAAACCGGTTGTTCAGCAGAACTGGAATC
TTGCATTATTCTGTGTTGCCAATCAATGATAGTTTTTATCAAACTATTTATTTACTTCAAAAACTTGTCTGCAATTTGAGCATTAAATTAAAAGTTGTAA
ATACTGGAAATTCCTTTTATGGTGGAATTGTGTCTAGACCTTTGGCCCTTCTGTAACGTGTTAATTAGAATTTTCTTAAAATTTTTCCGTTCTGTTTAAA
TTTCAAGTGGTG