Detailed information on CNT0001463 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8L799|MIOX1_ARATH, E-value = 7e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001463

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00000.5021.8932.9632.77904.1271.79601.69400leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.5

Sequence

>CNT0001463
CTAGATACATGTAGTCATCGTGTCCCCATGACATCATCACATTGTTAAGTCCACATCTCTCTGAGTAAATCCCATATTTAGTGTTGTATGCTGGATTGTT
GTAGTCTGGATTTTCCTTAAAATACTGAAGTGGGAATGCAACACATGTCAGGTGTTTAATTTTAATATTTTTTTTTGTTTTCCACCCAAAAAAGAAAATG
AATTGACAGATTTACCTTGTGGTGAACAATGGACTCATCAAATCTGCAACCAACAGGGAATATGTCCCCTGTATGAACATAT

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G01660.1 Uncharacterized protein protein coding CNT0001463 585 286 CDS Trans
GLYMA07G01660.2 Uncharacterized protein protein coding CNT0001463 585 286 CDS Trans
GLYMA07G01660.3 Uncharacterized protein protein coding CNT0001463 585 286 CDS Trans
GLYMA07G01660.7 Uncharacterized protein protein coding CNT0001463 585 286 CDS Trans
GLYMA07G01660.8 Uncharacterized protein protein coding CNT0001463 585 286 CDS Trans
GLYMA07G01660.9 Uncharacterized protein protein coding CNT0001463 585 286 CDS Trans
GLYMA08G21300.1 Uncharacterized protein protein coding CNT0001463 766 282 CDS Cis