Detailed information on CNT0001464 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001464

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000005.5786.0280.9750.4343.9952.2670.6190.89100leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (51 aa)
QHSHMLISTLFNFAYSSLIFFTCIGMYVQFNTMLHPFSILKLLVKIVANMS*

>peptide 2 (29 aa)
TFPYAHLYPVQFCVLLSHFLHLYRYVCSI*

Sequence

>CNT0001464
CAACATTCCCATATGCTCATCTCTACCCTGTTCAATTTTGCGTACTCCTCTCTCATTTTCTTCACCTGTATAGGTATGTATGTTCAATTTAATACCATGC
TTCACCCCTTTTCAATTTTAAAATTACTAGTCAAAATTGTGGCAAACATGAGTTGAAATTTGAGATTTGAGATTTGAGATTTGAGGGGAGGGCATGGTAA
ATGCAATTTTTGTGGTAGATGCTTACGAAATCAATTGATTGGTAAGTGTGATTTTTTCTGTAGAAGTTCTCCACTCCTTCATGCCTCTCACTTTCAGCAT
CATTATAAGCCCTGTTTTACAGTAGATTATCACTCATAAGATAATTCTAGCAGCATTTTCACATATGCACACATCTAACCAGTTTTCATTTTGAGAATTT
TTAGTGATCCCAAGTTAATCGCAAGTGAAATTACAAGTAGTATCTTGTTCATTTTTTTTTTTACCAAAAATTCTGAGAAAAGACTAATAGCTCTAATCGT
TTACTTGCATTTATAATAATGGAAAAAGGTTGTTAACAAACCAAATGTGATTATTTCATCCGTAAAAATAGTTTACCAGTATGAATTTGAGATATTCCCT
AACATGTTTTTTTAAAAGTAATATACTGTGGTTTATTTTGCCTCAGTTTTGAAGAAAATTACATTTTTTT

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G01660.1 Uncharacterized protein protein coding CNT0001464 735 573 CDS Trans
GLYMA07G01660.2 Uncharacterized protein protein coding CNT0001464 735 573 CDS Trans
GLYMA07G01660.3 Uncharacterized protein protein coding CNT0001464 735 573 CDS Trans
GLYMA07G01660.7 Uncharacterized protein protein coding CNT0001464 541 326 CDS_UTR Trans
GLYMA07G01660.8 Uncharacterized protein protein coding CNT0001464 735 573 CDS_UTR Trans
GLYMA07G01660.9 Uncharacterized protein protein coding CNT0001464 541 326 CDS_UTR Trans
GLYMA08G21300.1 Uncharacterized protein protein coding CNT0001464 1492 561 CDS Cis