Detailed information on CNT0001468 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001468

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.3240.52101.4190.3090001.2710.2540.2760.3022.8680.890.36leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.833.2

Sequence

>CNT0001468
CTTTGCCCTCTAATATATATCTGCCACAAATTCAGAAGACATTAAGTTCCAACAACCAGGACCATTAAATTTAAAATTGAAGAATATTGTTCACTTGCCC
TTAACTCTAAATCTACATTTGAAGTCAGCATCACCATACATGCTGCTTCAGATTAGAGGATAAGATTGCCAATAAGGAACCGAACACTACTGATTTAGAT
CCATGTCTTGCAATTCCTTTTTACTGAAGTAAATCTAAACCATCTGGAGAACGCAATACAACATGAGAGGTTGCTGAGAGCTACTTTTAGAATGAGGAAA
ATCCCTTATTTTTTGGACCTATCATTTTTTAAATTCTAGCTCATCATATATATGCTCTTGCAAATGGGATGGTTGTTCTAACTATGAAAAGCAATTCTAA
AATTTACTCTCACTGGATGCAGGAAGCATGCACTTGATATATCTCTGATAGCTAAATG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G43690.1 40S ribosomal protein S8 protein coding CNT0001468 1236 458 CDS Cis