Detailed information on CNT0001476 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001476

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAEQKLLPGMPLRSYKMVVRTSIHQTFWMSLTTYFTQPVIMKGN*

>peptide 2 (38 aa)
MQLGNNLAITCQVGKFLYNQISRLQGTTYPEKCEVGHG*

>peptide 3 (31 aa)
ADKCTEIIKERKKKVKKRKREKENQGEALYV*

Sequence

>CNT0001476
TAGCAGACAAGTGTACAGAGATTATTAAAGAAAGAAAGAAAAAGGTGAAAAAACGAAAAAGAGAGAAGGAAAATCAAGGAGAGGCTCTTTATGTTTGATT
GTTTTACAGCGAATAATGTACTGTTTCTAACTTAGCATTTATGCCACAAGTACAATATCTTCTTTGCTTTACTCCTTCATAAATTGAATCCCGCAGTTAT
ATATATATCTCAGTACGCCACACGCACTCCAATCAAAAGAATGCAATTGGGAAACAATTTGGCCATAACTTGCCAAGTTGGTAAGTTTCTTTACAACCAA
ATTTCAAGGCTTCAGGGAACTACATACCCTGAGAAATGTGAAGTTGGTCATGGTTAAGCATTACCACCCCTTCAGAAAAAGAATATGCAAGGAACCAATG
ATGCACTCATCATTTAGGCAGGGATGAAGATTTGAAGGAAAGAATAGTGTTTGACTCCTCCACTAGAACATATTTACACGGAAGAACCATGGCAGAACAA
AAGCTATTACCAGGCATGCCATTAAGAAGTTACAAAATGGTTGTCCGCACAAGCATCCACCAAACCTTCTGGATGAGTCTCACCACATATTTCACACAAC
CTGTGATCATGAAAGGTAATTAAAGATTGTAACAGAACTAACATAGAACAAAAGGAACCTCAGGATTATTGAACTAAAAAACTAGTTTGCATATGAAACA
AGATTGGCCATGCTTTGCTGATAACATTCTTATAACTATGTAAATGTTTTAAAAACAAACACAAGTAAACTCTTG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G29211.1 Uncharacterized protein protein coding CNT0001476 123 45 CDS Trans
GLYMA08G12380.1 Uncharacterized protein protein coding CNT0001476 524 200 CDS Cis