Detailed information on CNT0001480 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001480

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MIIFLILFYFFQLITFFIFYFFHTINFLILLDFFHTRYTTNFLILLDLFHTINFLYPP*

>peptide 2 (32 aa)
AINSRSPWLCFLWFLSFFFHFLPIDFPSPTFF*

>peptide 3 (75 aa)
RSIVGVLGSVFFGSFLFSFTFSPSIFPLPRFFDPFLPLLSSVFSSSFDLSILSLSSSSSSSIATSFFSFSSLSSS*

>peptide 4 (42 aa)
MPPSTSIASTSGFSACTFSFSCLPSIVSLTSVSSSILSFSDI*

Sequence

>CNT0001480
GCGATCAATAGTAGGAGTCCTTGGCTCTGTTTTCTTTGGTTCCTTTCTTTTTTCTTTCACTTTCTCCCCATCGATTTTCCCTCTCCCACGTTTTTTTGAT
CCTTTCTTACCCTTACTATCTTCTGTCTTCTCTTCTTCTTTTGACTTATCAATATTGTCCTTATCCTCATCTTCATCCTCCTCCATCGCCACATCTTTTT
TCTCCTTTTCATCACTCTCCTCCTCCTGAATGCCACCCTCTACTTCCATAGCATCTACTTCTGGTTTCTCAGCTTGCACTTTTTCATTTTCTTGTTTACC
TTCAATTGTTTCCTTAACCTCAGTGTCTTCATCCATTTTATCATTCTCAGATATATGATCATCTTTCTTATCCTCTTCTATTTCTTTCAACTCATCACCT
TTTTTATCTTCTACTTTTTTCACACCATCAACTTCCTTATCCTCCTCGACTTCTTTCACACCAGATACACCACCAACTTCCTTATCCTCCTTGACCTCTT
TCACACCATCAATTTTCTGTATCCTCCTTGACTTCTTTCACACCATCAACTTCCTTACCCTCCTTTACTTCTACGCCATCAACTTCCTTATCCTCTTTTA
CTTCTCCCAC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G44120.1 Uncharacterized protein protein coding CNT0001480 121 145 CDS Cis
GLYMA08G44120.1 Uncharacterized protein protein coding CNT0001480 118 95 CDS Cis
GLYMA08G44120.1 Uncharacterized protein protein coding CNT0001480 1700 610 CDS Cis
GLYMA18G08630.5 Uncharacterized protein protein coding CNT0001480 1065 622 CDS Trans