Detailed information on CNT0001483 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001483

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.8712.7972.50102.0771.0440.8171.53200.34100000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MSQLSRAPSNVKEETWFSFFFQINFLRLSSLTWLKQDLKSTTKEHMLAFC*

>peptide 2 (62 aa)
MVFSYVSTLKSTFKCKRGNLVQFFFSNQFFKTLKLNMVKTRPEIHYQRTYASILLKVNLEFG*

>peptide 3 (33 aa)
MRWNLILLPDFRRLLNFPNGLFLCLNSQEHLQM*

Sequence

>CNT0001483
ATATGAGATGGAACCTTATTTTGCTGCCTGATTTCAGGAGATTGTTGAATTTCCCAAATGGTCTTTTCTTATGTCTCAACTCTCAAGAGCACCTTCAAAT
GTAAAAGAGGAAACCTGGTTCAGTTTTTTTTTTCAAATCAATTTTTTAAGACTCTCAAGCTTAACATGGTTAAAACAAGACCTGAAATCCACTACCAAAG
AACATATGCTAGCATTTTGTTAAAGGTGAATTTGGAGTTTGGTTGACACTTACAGTTTGTTTGTGCTTCTCTCTTAGCAAAAAGAAACATTAAGTTGGTA
GTTTGGTGGGTGATAAATGGAAAGAAAGTGAAAGAAAAATC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA05G27367.1 Uncharacterized protein protein coding CNT0001483 437 294 UTR5 Trans
GLYMA05G27367.2 Uncharacterized protein protein coding CNT0001483 472 308 UTR5 Trans
GLYMA05G27367.3 Uncharacterized protein protein coding CNT0001483 437 294 UTR5 Trans
GLYMA08G10350.1 Uncharacterized protein protein coding CNT0001483 914 341 UTR5 Cis