Detailed information on CNT0001487 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0V9C8|KXDL1_XENTR, E-value = 5e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001487

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.8422.0261.72510.1242.4083.7812.7621.119.68812.36312.37310.389.6418.667.935leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRFAVVTKEKEKEVETEQECGQRRKARVGRDLARVENPSEFQ*

>peptide 2 (56 aa)
MQHTMLQDSNAVLSHFNDFSQHCFAEISGDIARNTRVLRSVKSDLDYIFQKLRSMK*

>peptide 3 (29 aa)
MKVCFFYCNKHVLFVSIVSTKLLALSQIL*

>peptide 4 (38 aa)
MSYLSQSFQQSFLPLVKFSKLFFYILYIANSKYFTPKR*

>peptide 5 (45 aa)
MISTPLTSCNTPCCRIAMRCCRISTTSLSTALLRFPATSLETRVF*

Sequence

>CNT0001487
AAAATGTCCATATAGTTATTCAAAATCAAATTTAGACAAGATCCAGAAGCATGACAAATTGGACCCATAGGCCCAGTTTGGTGATAATGAAACGATGCGT
TTTGCGGTGGTAACGAAGGAGAAGGAGAAAGAGGTAGAGACAGAGCAAGAATGTGGTCAGAGAAGGAAAGCGAGAGTCGGAAGAGATTTGGCGCGAGTTG
AAAACCCTAGTGAGTTCCAATGATCTCCACTCCCTTAACCTCATGCAACACACCATGTTGCAGGATAGCAATGCGGTGTTGTCGCATTTCAACGACTTCT
CTCAGCACTGCTTTGCTGAGATTTCCGGCGACATCGCTAGAAACACGCGTGTTTTGAGGTCTGTCAAGTCCGACCTTGATTATATCTTTCAGAAGCTCAG
AAGTATGAAATAAAAAATTATGGCTACTTATCCCGATGCATTTCCTGAAGACTCATCGAGCGAAGTGATTGATAGGAGACCGGATCTTGAAATGTCCAAG
TAACTAACGTTATCCGAACACAGATTAGAATGAGTTATACTAATGAAAGTTTGTTTCTTCTATTGTAATAAACATGTCCTATTTGTCTCAATCGTTTCAA
CAAAGCTTCTTGCCCTTAGTCAAATTCTCTAAACTTTTTTTCTATATACTTTATATTGCAAACAGTAAATACTTTACGCCCAAAAGATAAAATGTCAATT
TCAGGT