Detailed information on CNT0001490 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q01540|AG_BRANA, E-value = 1e-26

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001490

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.7713.6313.2980000021.66915.55618.63622.69519.39700leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)024681012141618202224

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNIQTPGNVHSTRTTSNKTLISPIFLFISPVPSNT*

>peptide 2 (71 aa)
MGRGKIPIRRIENSTNRQVTFCKRRNGLLKKTRELSILCDAEVGVIVFSSTGKLYEYSNTRQCSQYTHNKQ*

>peptide 3 (31 aa)
MDFQFTYFVPLFYPRKFKFFRWLRSSLFLLH*

Sequence

>CNT0001490
CTTTTCTTCTTCTTCAACTCTTCCTTAACAGAGCATAATTTTCTATGAAAGGTGAATCTGGCCATTAATTAGTATTCGATATCTCAGATATCGTTGATTA
ATTGTTATTCCAAAAGAAGAGAAGAAAATTTGGTGAAGGAAACCCTAGTAAGTAGATGGGGAGAGGAAAGATTCCCATTCGAAGAATCGAAAATTCGACG
AACCGACAAGTGACTTTCTGTAAGAGAAGAAATGGGTTGCTGAAGAAAACTAGAGAACTATCCATTCTCTGTGATGCAGAAGTTGGAGTGATAGTGTTTT
CCAGCACTGGCAAGCTTTATGAATATTCAAACACCAGGCAATGTTCACAGTACACGCACAACAAGCAATAAGACACTAATATCCCCTATCTTTTTGTTCA
TTTCTCCTGTACCTTCCAATACATAAAATGGACTTTCAATTCACCTATTTTGTACCATTATTTTACCCAAGAAAATTCAAATTCTTTAGATGGCTTAGAT
CATCCCTCTTTTTATTACATTGATGAACAACCAAAGTAAAACCATTCTTCAAGATTGTTGGGTAGATATGCAAATTAGGGTTCTCCTTTCA