Detailed information on CNT0001491 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001491

Peptides detected in this lncRNA

>peptide 1 (32 aa)
GQPSDIAKITIKSNSKFFIRDKLSCSWIIEKF*

Sequence

>CNT0001491
TGGGCAACCAAGTGACATTGCAAAAATTACCATTAAAAGCAATTCCAAATTCTTCATTAGGGACAAGTTGAGTTGCAGCTGGATTATAGAAAAGTTTTAG
CTTTTCTCCCTGCCAAAATTTGTAAATTTTTTTACTAAAAGGTAATTGATTAAGTAACAAGCTAGGAGTTAACTCAATACTTTTATACTTACTGAAGAAG
GAGGGAGGCCATTCATGGTTTTCCAATAGACAGCAGCCCTCCCTATTTCAAACTTAGCCCATGATGGAAGCTTGTACCTGTAAACAATGATTGTAGATAA
TGGTATTGTAATAATGTTATCCAAAATTAACTTTTATTCTGGAGAAACAAAAAATTCTTAAAGCACAAACACTACAACTTCAATACCATCCCCATCACCT
ATTCATTATTTAATTTCCATGCTCTTTTTTCCCATTGCAGGTGACACTATCATTGTGAAGTGAAGGAAAGACAAAAGTAGATCATGGAAAAGGTATTAAG
ACGGGGAATTTGTACTCTTGAATTTCCTCAGTTGTTGTTGTTGTTGCAACAGCAGCAGCACTGATGTGTTTGCTAAATTTCACATGCTTTTTCTTCACAA
GGTAACTTCTTGGTGACGAAACATTGAGAAAAGGACTAACTGCATGAGAAATTATAAGTGTTACATTTGAAAGAGCATATACTAAT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G03360.1 Uncharacterized protein protein coding CNT0001491 521 268 CDS Trans
GLYMA07G03360.1 Uncharacterized protein protein coding CNT0001491 849 342 CDS Trans
GLYMA08G22740.1 Uncharacterized protein protein coding CNT0001491 1844 686 CDS Cis