Detailed information on CNT0001493 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005621, E-value = 4e-15 (V. vinifera)

Expression of CNT0001493

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)4.0984.1115.6718.4024.3977.5179.1255.6298.4053.7125.5665.4835.5596.3242.841leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.510

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLENYDKEVKEFLKFICCLVCCVTACWSS*

>peptide 2 (35 aa)
MNWIQRKIYLYNVTFGLYMLDWWERCTFSILYSTL*

>peptide 3 (67 aa)
MDFNSFICFSFLILLGCKILIISRYLCGVFFKKIHQLFEICLSHNCKLSLSNSAFGVLWLERQPKLC*

>peptide 4 (57 aa)
MLPCLLCYCLLEFLNLCRYCGDYINVFRSTIRYSVLQEVCLVRSKTIVTGRSKCRLV*

>peptide 5 (36 aa)
MLSTKRFDFLNSGKCELLRNAIKGFLTFFIKKGKCN*

Sequence

>CNT0001493
CAAAACAAATTAGAAAAAGCGAATACTTACGTTGTAAAAAAACAAAAAAACAGAGAAATTGTTACCATTTGTGATTTGTGAGTTCCTACGCAGTGTTCTC
TTTCGTTGTTGTTGGTCGTGCTCGTCCTCCTTTCTCTCGGCGATCCGAAGCGCAAAACCACCGCAATCCCTACGAATTTCGTGTCTCGATCCCGAATCTC
AAGGTTTAAAGATTGGTAATATGCTGCAGCAGGAAGTGAGCAGAGAAATATAGTTGCTGGAAGAGATGAATTGGATTCAGCGCAAGATCTACCTTTACAA
TGTGACTTTTGGGCTGTATATGTTGGACTGGTGGGAGCGTTGTACCTTCAGTATCCTTTATTCCACTCTATAGTCTATTCTAAATGGATTTTAACTCCTT
TATATGTTTTTCCTTTTTAATTCTCCTGGGATGCAAAATTTTGATCATTTCTAGATATTTATGTGGGGTTTTCTTTAAAAAGATTCATCAATTGTTCGAA
ATTTGTTTGTCACATAATTGTAAGTTAAGTCTGTCCAATAGTGCTTTTGGTGTACTTTGGTTAGAAAGACAACCGAAACTATGTTAGAGAATTATGACAA
AGAAGTTAAGGAATTTCTTAAATTCATATGCTGCCTTGTCTGTTGTGTTACTGCTTGTTGGAGTTCCTAAACTTATGTAGATATTGTGGTGATTATATTA
ATGTGTTTCGTTCTACGATACGTTACTCAGTTCTTCAAGAGGTATGTTTGGTAAGAAGCAAAACCATTGTCACGGGAAGAAGCAAATGTAGATTGGTGTA
GCTGAATAGGGAATATCTTGATATAGCCTGACTTGGAATTTCTTAAAGCTACCCAAAAATTGAGCTTTTGATGCCCCAACTATACACCGTCATGAATCTT
ATTTGAACATTTATTTTCATATAAGCTTGTATGGGATGCCAATTAGCATTCTTTACATTGTAATAATTGTTGGGAATGCTCAGTACTAAGCGTTTTGACT
TTTTGAATAGTGGAAAGTGTGAGCTCCTCCGTAATGCCATCAAAGGTTTCTTGACTTTCTTCATAAAAAAGGGGAAGTGTAACTAAAGAAAAAACATTTT
TCACATTTCGAGATGGAATGACTAAAGCTAGCTAAAATTTTAGTCCTTTTTATTTTTCTA