Detailed information on CNT0001497 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0023852, E-value = 8e-08 (A. trichopoda)

Expression of CNT0001497

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0000000000.4992.98800.51200.354leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.833.2

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MVSTFSRRRKVNYGRGRKGELNCSWKKERASTQKQGQDSCSASHKERVQVFLLQEERSHEERLLKV*

>peptide 2 (72 aa)
MEEGERVNLTVHGKKKGHQPKNKGKIPAQPVIKKESKCFFCKKKGHMKKDCLKFKSWMDKKGYGKPKDACGK*

Sequence

>CNT0001497
AAGAGAATTTGAAAAGGAAAAGGCGCGGCTAGATCTGGAAGTGTCCGTTGCGTTTGATCCTTAACCCTAATCTCTACAAGTTTGATCTGAGAGAGAAGAG
AAATGGACAAGTAGGAGAAGGGACATACGGGAAAGTGTACAAGGCTCTGAAGAAGACGCGTCTGGAGATGGACGAGGATTGGCAAAGAATGTGCCTTCCT
TAGGACCTGATGGTCTCGACCTTCTCACGAAGAAGAAAGGTTAATTATGGAAGAGGGCGAAAGGGTGAACTTAACTGTTCATGGAAAAAAGAAAGGGCAT
CAACCCAAAAACAAGGGCAAGATTCCTGCTCAGCCAGTCATAAAGAAAGAGTCCAAGTGTTTCTTTTGCAAGAAGAAAGGTCACATGAAGAAAGACTGCT
TAAAGTTTAAGAGCTGGATGGACAAGAAAGGGTATGGAAAACCTAAGGATGCTTGTGGGAAGTGAG