Detailed information on CNT0001501 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001501

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LCNSSRALSRNPHSSNNEIWAIIFSAEKHHGEK*

>peptide 2 (52 aa)
MSIIIYSTCCLGYVNKITGAQISHFPAHYASQKSPIPRLVLDSEYHICWTYF*

>peptide 3 (32 aa)
MLTPFIFWRMILFQSPFICFQNFNCFGCTEFK*

Sequence

>CNT0001501
TTGTGCAACTCCTCCAGAGCTCTCTCAAGAAACCCGCATTCCTCTAACAATGAGATCTGGGCAATAATATTTAGTGCAGAGAAACACCACGGGGAAAAAT
AATAACAGCAGTCAAACCATATTAAGATTTCATATTCTTGAACATTCAACAGTAGAATTGACAGCAAAGAGAATTGTATTCAACAAATGTAATTTGACCA
TATATCAAACTATAAAAGTGACAAAAAAAATCCAATTGATTTATAAAGCCATAGTGGATACCAGCTATCATTAGCATATAAATTATTAAAGAGCATCACA
AAAAGCCAATACACATTCAGTTACACCAACCCTACTAAGGGTCTTATCTTATCTAATTGATAGAAGCTTCAAAGTACCATGAATACCACCCAGAGGTCAA
CCTGAGAATTAATAATGAGTATTATCATTTACTCCACCTGCTGCTTAGGTTATGTGAATAAAATAACTGGTGCACAAATAAGCCATTTTCCAGCCCATTA
TGCCTCACAGAAGTCACCAATACCAAGACTTGTACTAGACAGTGAATACCATATCTGTTGGACATATTTTTAAATAGGCCATTGTTTGGACCAAGGGTTG
ACCCAGTCAGGTGGCCAGTTTACTATATTGACAGTCTGACAACCCAAAATTCATAAATCCAAACCACTGGGTTTGACAGAGAAAAAGGTCAACATGTATA
AACAGTCAATCGTGGCATTGAAGTCACAAGATTTTCTCATACAGTTTTGAAGTAAATATTAGCAGTTAGTTATAAACAAAATTTTGATGTCTAAAACTTA
AACCAAAAAACAGTAGCCAATTTAAATATTCATGTAAACAGAAAGCTAATTACGGTAAAAGTTACATGAAGCACCAAATATCTGAATAAGCATCATGCAT
TAAAAAAAGTAACAGCAGCAAACACACTGCCAGAGGAAAACCTTGTATAAAAGCATTTCCCCATGCTCACACCGTTCATTTTCTGGAGGATGATCCTCTT
CCAAAGTCCCTTCATATGCTTCCAAAATTTCAACTGCTTTGGATGCACTGAGTTCAAATGATGGGCTACAG

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G39397.1 Uncharacterized protein protein coding CNT0001501 700 317 CDS Trans
GLYMA07G03850.1 Uncharacterized protein protein coding CNT0001501 706 343 CDS Trans
GLYMA07G03850.1 Uncharacterized protein protein coding CNT0001501 592 276 CDS Trans
GLYMA08G22180.1 Uncharacterized protein protein coding CNT0001501 962 359 CDS Cis
GLYMA08G22180.1 Uncharacterized protein protein coding CNT0001501 814 306 CDS Cis
GLYMA13G43760.1 Uncharacterized protein protein coding CNT0001501 108 86 CDS Trans
GLYMA14G11940.1 Uncharacterized protein protein coding CNT0001501 742 307 CDS Trans
GLYMA15G01580.1 Uncharacterized protein protein coding CNT0001501 134 86 CDS Trans
GLYMA15G01580.2 Uncharacterized protein protein coding CNT0001501 134 86 CDS Trans