Detailed information on CNT0001513 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001513

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.7884.6456.01201.1040.9241.0850.3396.4268.7666.9054.316.51300.428leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (29 aa)
YIEREREAEWTDLCASVYRHTTPQHRSLL*

>peptide 2 (44 aa)
ILRERERQSGLTCVLQFIGTPRHNTDLFFNGYFCVLRKKKENRK*

>peptide 3 (59 aa)
MDYNNDPGAREPWDWHGKNISLGKTADFEISEELWNDVPQNEEDLSYMLDDETTPVKACG

>peptide 4 (44 aa)
MTLVLGSRGIGMGRILVSERRPILKFRKSCGMMSLKMKKIFHTC*

Sequence

>CNT0001513
ATATATTGAGAGAGAGAGAGAGGCAGAGTGGACTGACTTGTGTGCTTCAGTTTATAGGCACACCACGCCACAACACCGATCTCTTCTTTAACGGTTACTT
TTGTGTTCTGAGAAAGAAAAAAGAAAATAGAAAATAAAAATAGAGCCTCTCTGATCAGTGAGTGATTGGAGAGTTTGGTTCACCCTTGCTGTGCTCTGCT
CAGATGGATTACAACAATGACCCTGGTGCTAGGGAGCCGTGGGATTGGCATGGGAAGAATATTAGTCTCGGAAAGACGGCCGATTTTGAAATTTCGGAAG
AGCTGTGGAATGATGTCCCTCAAAATGAAGAAGATCTTTCATACATGTTAGATGATGAAACAACCCCAGTTAAGGCTTGTGGTGA