Detailed information on CNT0001514 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001514

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNAYKLRIICSGSPTAKMRHFIYFGTTATLIFFFYRNQS*

Sequence

>CNT0001514
GATGAATCTTTTCTTCTGTCTCTTGCTCAAGTCTCTTCACATTAGCACCAGAATCTCCACTACTCTGTACTCATAAGAATGAATGCATACAAACTAAGAA
TAATATGTAGTGGTAGTCCAACGGCGAAAATGAGGCATTTTATTTATTTTGGTACAACAGCGACATTAATTTTTTTTTTTTACCGTAATCAATCATAGAC
TTGCCTGTGACACTTTCTTTTGAAACTCGTACTCCAACTGAGCCCTATACTCGGCAATTTCCTTTTCAGCCTCTTCTTTGGCTTGCTTCAGTCTAGCCAA
TTTTTCTTAACAGTAGATCCAGAATACTGATACTGGTTAGTTTACCAATAAAGATATTCGATATAGATTCTACCTAATAGGAGTACAATAGTACAATAAA
GGTAGGGAGGGGAAAGAGACTAGTTTATCATAGCAATAGCTCAGAATTTGCTCTCACATGCATGAGGACACAAAGCAAGCCCATACCCCTCATAAAACAA
TAACTGAGACCCATATATGAAAATGAAAAGACCAATGCCAAAGGGATAAAGGGAGACAAAAATAGGAAATACCATTTTTTGCAGCATTGACAATTCTTTG
CGCTTCTTGTTCAGCAGCCAGCAACTGTTGAATTCCACCTTGACCCCTGTTGGATGCCATTCTGTGATAAAATTGGTTGATAACTAT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G33790.1 Uncharacterized protein protein coding CNT0001514 1888 687 CDS_UTR Cis
GLYMA10G06010.1 Uncharacterized protein protein coding CNT0001514 254 123 CDS Trans
GLYMA10G06010.3 Uncharacterized protein protein coding CNT0001514 254 123 CDS_UTR Trans
GLYMA10G06010.4 Uncharacterized protein protein coding CNT0001514 254 123 CDS Trans