Detailed information on CNT0001518 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001518

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.551.9972.0410.5310.8110.9450.9680.8010.11900.1030.057000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.8

Peptides detected in this lncRNA

>peptide 1 (124 aa)
NFASKIIIFPQIFPTGLVFVGKLNFPQTKTTQPYPSSFSSLSSYPNSSNSLYCFPLYFSEWLLLFSLQLPCQGFEDEDGAGETDYAAGMVAAQSTWDPWP
TTTQDTPQPAQNAPSSPHDEPTPA*

>peptide 2 (59 aa)
QFCIKNYNFSTNFSYGIGVCWKIKFPPNKNNPTLPIFLFFPILLSQFLQFSLLLPPLFL*

>peptide 3 (48 aa)
MNALLEPKFLHPRKTMNCLQPSLITSQESPSDSIFVFVIVCHEMKCKS*

>peptide 4 (32 aa)
MTLKLIDSMTRVNCDVRSHTLNKYAVIRRERT*

>peptide 5 (72 aa)
MRMALEKQTMQLAWSRRRALGIPGPLQHRIHLSQPRMLLPHLMMSPHRHRMTKDKALFIYFLLFRYSFKFQF*

>peptide 6 (43 aa)
MRETVTVRIWLDEPSLISILLASLFHLCCLMIMLVSLKFCISL*

>peptide 7 (29 aa)
MPQALPMSCLSFLALSVPNSLSQNSLTRA*

>peptide 8 (55 aa)
MAHSSLSVLGNPRRGSAKDMHAASSPNELFVLSRAQCAQLAKPEFTNSRLASQAG*

Sequence

>CNT0001518
CAATTTTGCATCAAAAATTATAATTTTTCCACAAATTTTTCCTACGGGATTGGTGTTTGTTGGAAAATTAAATTTCCCCCAAACAAAAACAACCCAACCC
TACCCATCTTCCTTTTCTTCCCTATCCTCCTATCCCAATTCCTCCAATTCTCTTTACTGCTTCCCCCTCTATTTCTCTGAATGGCTCCTCTTGTTCTCTC
TCCAGCTTCCTTGTCAGGGCTTCGAGGATGAGGATGGCGCTGGAGAAACAGACTATGCAGCTGGCATGGTCGCGGCGCAGAGCACTTGGGATCCCTGGCC
CACTACAACACAGGATACACCTCAGCCAGCCCAGAATGCTCCTTCCTCACCTCATGATGAGCCCACACCGGCATAGGATGACTAAAGACAAGGCTTTATT
TATTTATTTTCTGCTTTTTAGATATAGTTTTAAATTTCAGTTTTAGTTTAGTTTATTTACTTATTTAGCAAATTTTTCAGTTTTTGAAACAGTTTACAGT
TATTTATGCAGTGGTTATGTTGGTTTTAAAATTTCTGTGTTTGTGAATGACTTTGAAATTGATAGATTCCATGACTCGAGTGAATTGCGATGTTAGATCA
CATACTTTGAATAAGTATGCGGTAATTAGAAGAGAAAGAACATGAATTAGGGACGTGGGTGAAATTGTTAGTTTGTTTGACAGGTAAATTGTGAAGGTAA
TCATTAGCCATAACCCGGTGAGTGTGTGAACCTTTATTGTGAGAGAACGACTAGCATTGGGTACTGATTTTTGCATGAATCTCTTAATACTGAATGAATG
CATGATTTTGGAAATGATGAAGGTCGTGATTGATTGAATTAGCCACTTAGCCAAATAGGTTACCTTGTTTATGAATGATGAATCCCTTGCACCCATTTTG
AGCTTAAATATGATTGATTGAGATGAACCTTGAGCCTGTTGAATTATAATCTCCATCTACCTTTCTTAGGTTGTAGGAGAGCATCATGGTGCAAAGAAAA
TTTGTCCCAAATTTGGGGGACGATGTTGGGTGATGGTAATTGTGGTAAGATAAGTAAACGGCCACACATAAAGTATATAAGAAGCAACAAAGACTGCTAA
AATAAAATAAAAAAAGAGAGAGAAGTTTCAAGAATAAAAATATGTGTGTTGTTACTTAAGCTAAGTGCCTTAAATGTTGGTGGCAAGTCAATAGAAGCTG
GAATAAAAGGAAAAGAGTTGATCTAAGGATGAATGCTCTCCTAGAACCTAAGTTTTTACATCCTAGAAAAACCATGAATTGTTTGCAACCCAGCCTCATT
ACAAGCCAAGAAAGTCCTTCAGATTCAATTTTTGTATTTGTGATTGTATGTCATGAGATGAAATGCAAAAGTTGAGACTTGTGTTGGTTGTAAAATTGAA
GAATTGCCTTAAACACTTGTGCTTATGAGAGAAACAGTGACCGTGAGGATTTGGCTTGATGAACCTTCCTTGATATCTATCTTGCTTGCTAGTTTATTTC
ACTTGTGCTGCTTAATGATCATGCTCGTATCTTTGAAATTCTGCATATCTTTATGAAGAACTGTTGGTTAAAGTATTGCTCGCCACTTATGTTCATGTGA
TTGAATGTTTTGGATCAAACACATTTTTGAGTAACCACTCTGAATTCTATCACTTGAGGACAAGTAAATTGTTATTTCTTTGCTCAAGGACAAGCAAAAC
TATAAATTTGGGGGAGTTTGTTGGTCATCATTTACGACTAAGTTTTGTATTTAATAGTCACGTGAAATTATCATCTTTCCTCCAATTTATGGTTCTTTTT
GTAGCAATTGTACATATTTTCATATTTAGTTTAATTTTACTCAATAGATACTCCTATTTTTGTGAATCAATGTGAATCAACTTCAGTTTCAGGCTAAAAG
AAGAAGGAGGTTCAAGCAGTTAGTGTCTCGCTAAGCGAGCCATTTGCATGGCACACAGCTCGCTTAGCGTGTTAGGAAACCCTAGAAGAGGATCAGCCAA
AGATATGCATGCCGCAAGCTCTCCCAATGAGTTGTTTGTCCTTTCTCGCGCTCAGTGTGCCCAACTCGCTAAGCCAGAATTCACTAACTCGCGCTTAGCG
AGCCAAGCTGGCTAAGCGAGCCTTCAGAATCTGAAACGTCAAGAAGCCTTTAAAACACTGAAGTTGGCGTAAAATAAAAGAGGATTCAAAAAACAGAGCA
AGAAGAGAAGCTAGAGCGACAGAGCACCGGCCTCCAAGAGAGTTTAGGTTAGAGAAGTGATTTTAGGGTTCTAGAGGTTGGAGGAGGCATCCTCAACCAT
TTGTAGCCTTTGCCTTTCCTCAAAATCTATCCTTTGTGCTGAAAGTTTCTAACTTGTAATGGAAGGCTAAATCTCTTGTTGGAGAGTTTTGCTGAACCTT
TGATGTAATACTCTCTTACTATCTATTTAATGATGTTTTTATGTGTT