Detailed information on CNT0001521 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|A9BNG6|DNAJ_DELAS, E-value = 2e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0021258, E-value = 7e-07 (Z. mays)
CNT0022898, E-value = 2e-10 (A. trichopoda)

Expression of CNT0001521

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.8710.2331.19100.6922.7831.9061.9151.4231.7061.4851.0812.2181.5941.289leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRGVCGGGGGGGGGMISMLKPVSVLPLVGIDSSIGPSSMRKILSGGVLIHI*

>peptide 2 (29 aa)
MASRSSSRLFQGCSRREVRALQCGLSIFM*

>peptide 3 (65 aa)
MNSAIFKVSNSNDINSSFRAALFHSTPPLQRKRRNHWDSVSFSQFTLSFCHFIKQLLLIYRYYVN*

Sequence

>CNT0001521
CCGTGATAGTAATATTTGAGAATAAACATGGTTTACTCGAATGTTTCCTTAATTGTTAGCATTGTCTTCCCTAATGAACATTAAACTTATTAAGATGATC
CTAATTTTGATTTCTTGTTAAACTAGTTCGTTTCGATCGATCGAGGTTGGGCAAACAACTCGAATTGCAGAGAAAAATGAACAGCGCCATCTTCAAAGTT
TCAAACAGCAACGATATCAATTCCTCTTTCAGAGCCGCACTCTTCCATTCAACCCCTCCCTTGCAACGTAAACGCCGCAATCATTGGGACTCCGTTAGTT
TCTCTCAATTCACTTTATCTTTTTGTCATTTCATTAAACAACTTCTCTTGATTTATCGTTATTATGTGAATTAATTAATTAATAGAATGTAAAGTGTAAA
CCTTTGTCTCTTTTGATAGTGGGTCTCACCACACCAATTCCGTGTTCCTTTCTGATTTTGTATCCGTTTATTGCAATTTGGGAACTTTTTGTGTAACCCA
ATTTATTGAATTAATGAGAAGGGGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGATGATTTCGATGTTGAAACCAGTTTCCGTTCTGCCTTTGGTG
GGAATAGATTCTTCTATTGGTCCTTCATCAATGAGGAAAATCCTCAGTGGAGGAGTTCTGATTCACATTTAGTTTCTGATAGATTAGCCCTCGGATTGAG
TGTTTCTGGTCCACTGAAACTTGAAGATGTAAAAAATGCGTACCGGCCCTGTGCTCTAAAATGGCATCCAGATCGTCATCAAGGCTCTTCCAAGGCTGTA
GCAGAAGAGAAGTTCGAGCTTTGCAGTGCGGCTTATCAATCTTTATGTGATAGCCTGGCCCTGGATTAAGGACCCTTCAGACGTAGACTAATCCTTTTCA
AGAAGTCTCCAGCTAGTTCATACCAGATGATTGACCTTGCTAAAATTATTTGACACACCAATCTTGCTTTCTTTGTATTTTTGTAGTTGAGTAATTTTAT
TAGATGATCATGGAAATAATGTG