Detailed information on CNT0001522 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001522

Peptides detected in this lncRNA

>peptide 1 (44 aa)
ILQIPQITKISTKTLHLNFGVLKCESYIKLNFWSLGHQNGIRLD*

Sequence

>CNT0001522
GCATCCTCCAAATACCACAAATCACCAAAATAAGTACCAAGACTTTGCACCTCAATTTTGGTGTTTTGAAATGTGAAAGTTATATTAAATTAAATTTCTG
GTCATTAGGCCACCAAAATGGTATAAGGTTAGACTAGAAGCAACTAATAAGCTTTCAAATTACAAGTATCGGAGGCAGGTTATTTTCACACATTAGGAGA
AGAAATTGGTCACTCATGGAGCTTAATACAACATAATTAAAGATAAACCTTTCAAATTACAAGTATCGGAGGCAGGTTATTTTCACACATTAGGAGAAGA
AATTGGTCACTCATGGAGCTTAATACAACATAATTAAAGATAAAAATGTCACAAAGTCACACCTTCTTGGATTTCTCCTCCTTCTCCAAAGCATCTTTGC
GCTTATCCTTG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G26100.1 Uncharacterized protein protein coding CNT0001522 808 299 CDS Cis
GLYMA07G13900.1 Uncharacterized protein protein coding CNT0001522 336 166 CDS Trans