Detailed information on CNT0001532 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0PGJ6|AKRC9_ARATH, E-value = 1e-33

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001532

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.0820.5240.40200.2340.4890.7650.7180000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.70.750.80.85

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSGCSRYSLLNPNVPLFMRTGQWIYSRNQFSLF*

>peptide 2 (38 aa)
MTCLQAPSKGNLCWCLPQSLCNLCDNRILKNITFESCW*

>peptide 3 (33 aa)
MNFFRFTKCAQLWLLPSWVQFHLVNSRNHSCYI*

>peptide 4 (31 aa)
MRITDALCSKRNFNLKHLGAEKTFLFLLFSV*

>peptide 5 (33 aa)
MKFVLPTKFFLFTKLKHESLLEGSESYLTNFHL*

Sequence

>CNT0001532
TATAGGCACCATAGGTCTCGTGAACAAAAAAACTGGCCTTAACTAGCCTTTCCTGCATGAGTAAACTCCATGTGTTAACTAGCATTTTTGTTGATGTAGT
AAAAGATGTATAGGAAATAGTAAGAATCAAGAAAAAGAACAAAAAAGAATATCATACGAAGTATCTAACTACTTGCCTGCTTAATTTCAGAGATCTTGGT
CATCAAATCTTGAGGAATAGACCAGTCAAAGATATCAAAATTTCCCTTGATTCTGGACTCATTAGTGCTCTTAGGAAGCACACTATGACCTGCTTGCAAG
CCCCATCGAAGGGCAACTTGTGCTGGTGTCTTCCCCAATCTCTCTGCAATCTCTGTGACAACAGGATTCTTAAGAATATCACTTTTGAGAGCTGCTGGTG
AACCTAGTGGAGAATATCCCTGAAAAGAAATTCATCATATATACTCCATCTTTGAGTGCACACCGAAATCATTTTCAACTAGCTCAAGACAATTTCACCG
AAAGTGATAATTTTTCTTTGCAATTGATAGTTGAGAAAATGGATTATATACTGACAATTAAAGTAATTTTACATTATCATTCAATCACAAAACACCATGT
ATAGTGAGTTTGTTGACTTTTGTGATAACTACTTTAAAAGTCATACCAACACTCAGTTTTAATTAGTTGACTATGCAAGCTTACTTTACATTGTGAGTGC
ATCACCATTAAATTCTTGATAATTTAGGAATATCAAGTCTTTTAAGTGAAAGTATATATCATATATGCCATACTTACAGATAGATGAATTTCTTTAGATT
CACAAAATGCGCGCAACTTTGGCTGCTGCCATCCTGGGTGCAATTCCACTTGGTTAACAGCAGGAACCACTCTTGCTATATCTAACAAATCTTGAAGCTT
CTTTGAAGAGAAATTGCTCACTCCTATGGCTCTAGCCTTGTCTGAGTCATAGAGTGCCTCCATTGCTCTCCATGTATTGGGAATGTCTGGTTGCTCAAGA
TATTCTTTATTGAATCCAAATGTTCCACTTTTCATGCGGACTGGCCAGTGGATCTACAGCAGAAACCAATTTAGTTTGTTTTAAGACAGAATAATTGATG
AAAATGAAATCAACCCCTGATAACTAAACTCTGCATTACATGAATGCGTATAACCGATGCACTTTGCTCAAAGCGTAATTTTAATTTAAAGCACTTAGGG
GCAGAGAAAACGTTTTTATTTCTCCTATTTTCAGTTTAAAATACTATCAAGTTACCATGTTATTACGTTAATCAACTTTGTTGAGGACTAATTTTTGCCG
TTGAAGAACCTGACTAGCCACTTTTAGTGAAGTTTGTCCTCCCAACCACATTTTTTCTATTCACAAAGCTTAAACATGTGACCTTGCTTGAGGGGTCAGA
ATCCTGTTTGACTAATTTTCACCTTCGAGGAACCTGACTAGCTAGCTACTTTTAATGAAGTTTGTCCTCCCAACCAAATTTTTTCTATTCACAAAGCTTA
AACATGAGAGCTTGCTTGAGGGGTCAGAATCCTATTTGACTAATTTTCACCTTTGAGGAACCTGATTAGCTACATTAATTAAGTTTTTCTTCTTAATCAC
GTTTTTTTTCATTTGAAAAACTCTAACATAAGAATTTACTCGAGGAGTCCAAACCTAGTTCCACTTGAAATAGTTGGTTCGAAAGTTTTTCATTCAAAAA
GTAAAAATGAATGTTTCCTTGTACTAAACAAACCCTTAATCTTCCCCCAAATTTTCAACATGAATTCACATATCAGTAAATATAATACATGCATACCAGA
TAGAGGTCAAGATAGTCAAG

lncRNA-RNA interactions

Number of interactions: 15

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G24915.1 Uncharacterized protein protein coding CNT0001532 98 75 CDS Trans
GLYMA01G24931.1 Uncharacterized protein protein coding CNT0001532 198 86 CDS Trans
GLYMA01G24931.1 Uncharacterized protein protein coding CNT0001532 714 357 CDS Trans
GLYMA01G24931.1 Uncharacterized protein protein coding CNT0001532 621 283 CDS Trans
GLYMA01G24931.1 Uncharacterized protein protein coding CNT0001532 146 75 CDS Trans
GLYMA01G24960.1 Uncharacterized protein protein coding CNT0001532 204 178 CDS Trans
GLYMA03G11580.1 Uncharacterized protein protein coding CNT0001532 3538 1303 CDS_UTR Cis
GLYMA03G11580.1 Uncharacterized protein protein coding CNT0001532 718 274 UTR5 Cis
GLYMA03G11610.1 Uncharacterized protein protein coding CNT0001532 3509 1303 CDS Trans
GLYMA03G11610.1 Uncharacterized protein protein coding CNT0001532 718 274 CDS Trans
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001532 163 86 CDS Trans
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001532 757 355 CDS Trans
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001532 591 283 CDS Trans
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001532 126 75 CDS Trans
GLYMA14G35310.1 Uncharacterized protein protein coding CNT0001532 101 80 CDS Trans