Detailed information on CNT0001549 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FJD5|LAC17_ARATH, E-value = 3e-43

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001549

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLVSCITSSTLVLKGRTSNFVPLVTMVLFGGVPV*

>peptide 2 (39 aa)
MLHWVMRYGSEKNISGLSRSYKNSVGLKWFGINGICFND*

>peptide 3 (37 aa)
NVGVLHNKLYTCVERKNLQLCPIGHHGVVWWGACVVE*

>peptide 4 (42 aa)
MLNKSSSLSATLIKQRRYLFPSLNVSAIVQSSILNLEISRFS*

Sequence

>CNT0001549
GAATGTTGGTGTCCTGCATAACAAGCTCTACACTTGTGTTGAAAGGAAGAACCTCCAACTTTGTCCCATTGGTCACCATGGTGTTGTTTGGTGGGGTGCC
TGTGTAGTCGAATGACATTAAAGGGTTAATTGGAAAATCAAGTGAGTAAATTCCATTGGATTTCCCAAAAAAATGGGCTTGAAGAAGTGTTGTGGTTGGG
AGTGTGATAGACACATGGCTCCATTAGGTCCCTGGCAAGTTTGATTATGCGGATCGACAGAGACTCGTTCCAAGACCAACGGTGAAGAAAAAGTGCTTAT
TAACTTTTTGGGGGACATTACAAGGAAACTGTGAAGTTGCAAGGCTATGGAGCTTGTGGGTGAAGGTTGTTGCAATTGCAAATGAAGTGTCATTAAGAGC
AGGGAGGTCATTAAGGCTTAAAGAGTGAAAGGTTGTTCATGGAAGTTGTTTTGTGAAGAAAGCGTGACGGAATTTCATATTCCAAGATACCGGTAACAGT
GGAGTTGTCACATATGGCCTAGCAGCCATAAAGAATGTTGCATTGGGTTATGAGATATGGTTCTGAGAAGAACATTAGTGGTTTGTCCAGGAGCTATAAG
AATAGTGTTGGTCTCAAATGGTTTGGCATAAATGGGATCTGCTTCAACGACTGAGGGCTGTGATTTGCAATGCTGAATAAGAGTTCATCATTGAGTGCAA
CATTGATCAAACAGAGAAGGTATCTCTTCCCAAGCTTGAATGTATCTGCCATAGTCCAATCTTCTATATTAAATTTAGAAATATCTCGTTTTAGTTGATA
TAGTTTCTGTTTGATTAAGACAAAACTTGCAGATAAAAGAAGTGTTAATTTCGTTTAAAAGAGAAACACTAGCAACACAATTTTTTCAACAGATAAGTTG
AAAGTGTATTAGAAAATGTATTACTAGCACTTCTCTTATTAAA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G19690.1 Uncharacterized protein protein coding CNT0001549 2618 943 CDS Cis
GLYMA07G17646.1 Uncharacterized protein protein coding CNT0001549 97 135 CDS Trans
GLYMA08G47410.2 Uncharacterized protein protein coding CNT0001549 262 220 CDS Trans
GLYMA08G47410.2 Uncharacterized protein protein coding CNT0001549 132 103 CDS Trans