Detailed information on CNT0001553 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001553

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.2370.19000.2260.2840.4450.4170.23200.40400.38200.526leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.6

Peptides detected in this lncRNA

>peptide 1 (50 aa)
QLSCRGITTLSVCSVPTRQQLKHCQLFQFVEVSPPSSNQYTPPIHIFFAN*

>peptide 2 (30 aa)
TTVVSRHHHLVRVQCSNKATTQTLSTVSVC*

>peptide 3 (79 aa)
NCRVEASPPCPCAVFQQGNNSNIVNCFSLLRFHHLPPINILHLSISSLQINNGFGFVLLACALFTSQLYPFSLNVLPGT*

>peptide 4 (31 aa)
MKQTHLIDVTEVFRLLSAEKKFRIAKILLIT*

>peptide 5 (34 aa)
MGLDLFFWLVLCLPLNFTLLASTFYQVHETDASH*

Sequence

>CNT0001553
ACAACTGTCGTGTCGAGGCATCACCACCTTGTCCGTGTGCAGTGTTCCAACAAGGCAACAACTCAAACATTGTCAACTGTTTCAGTTTGTTGAGGTTTCA
CCACCTTCCTCCAATCAATATACTCCACCTATCCATATCTTCTTTGCAAATTAACAATGGGTTTGGATTTGTTCTTTTGGCTTGTGCTTTGTTTACCTCT
CAACTTTACCCTTTTAGCCTCAACGTTCTACCAGGTACATGAAACAGACGCATCTCATTGATGTTACTGAAGTGTTTAGGTTACTTAGCGCTGAGAAGAA
ATTTCGGATAGCCAAAATTTTGCTTATTACTTAACAATCATCTTTATATCTATCTTCAGGTTAGTTTTTTATGCCCTTAAAGTAACATATGCTTATCTAC
TGTGCTTTGGGTTTTACATTCTTACGGGTTAAATTTATGTATATCTATTTTCCTTGGTAATGTGAAGAATTAGGATTGTGTTAGGCAAACCCTATGGGTT
GGTTTCTGTCACCGTTAGCTGAAGGGGTTAGAGTTAGTTATTGTTAATGAGAGAAGATCTGAGGTATTCTGTTATTGTTGAGTTGATAGGTTTAAATAAT
GCGAGAAGATTGGAGGTATTCTGTTT