Detailed information on CNT0001557 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001557

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.6770.3581.46300.8510003.05901.5211.2462.15200.99leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.25

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GLCDLSSRTGLSSLLTGDRDRLARPKAPKTQHTG*

Sequence

>CNT0001557
GGGCTTTGTGACCTATCTTCACGAACGGGGCTTTCTTCTCTTCTGACAGGGGATCGTGATCGACTAGCAAGGCCGAAGGCACCCAAAACTCAGCATACAG
GATAAGACTTTACAAACAAAAAATGTGAAACCTTGCTGCATCACTACATCGCATGCATAAGAATTCCGAACTATAAAATCATCTTACCTGTAGCTGCGAT
CTCGGCTGTAACTGCGATCACGGCTTCTGCCACGACGAGGTGAATGTGACCTGACTGGTGACCGTGAATAACTCCGTCCTCGCCTTGTGCTTGAATCAGA
CAGATTAGCATCGTCAGTTTAGAGCTCAGAGAC

lncRNA-RNA interactions

Number of interactions: 13

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G33260.1 Uncharacterized protein protein coding CNT0001557 984 333 CDS Cis
GLYMA03G33260.2 Uncharacterized protein protein coding CNT0001557 984 333 CDS Cis
GLYMA03G33270.3 Uncharacterized protein protein coding CNT0001557 174 100 CDS Trans
GLYMA03G33270.4 Uncharacterized protein protein coding CNT0001557 174 100 CDS Trans
GLYMA03G33270.5 Uncharacterized protein protein coding CNT0001557 174 100 CDS Trans
GLYMA08G07941.1 Uncharacterized protein protein coding CNT0001557 163 108 CDS Trans
GLYMA19G35980.1 Uncharacterized protein protein coding CNT0001557 795 333 CDS Trans
GLYMA19G35980.2 Uncharacterized protein protein coding CNT0001557 795 333 CDS_UTR Trans
GLYMA19G35980.3 Uncharacterized protein protein coding CNT0001557 795 333 CDS_UTR Trans
GLYMA19G35980.5 Uncharacterized protein protein coding CNT0001557 795 333 CDS Trans
GLYMA19G35980.6 Uncharacterized protein protein coding CNT0001557 795 333 CDS Trans
GLYMA19G35990.1 Uncharacterized protein protein coding CNT0001557 177 101 CDS Trans
GLYMA19G35990.2 Uncharacterized protein protein coding CNT0001557 177 101 CDS Trans