Detailed information on CNT0001565 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8GX29|SKI25_ARATH, E-value = 7e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001565

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.69510.950000000000.095000.569leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFIYIDSLVTHLYDPSTLRKIKNLLFKLVLDGLR*

>peptide 2 (56 aa)
NSNPIPNLSLSNGIHQTPASIFISLDRERKSVRCRNHVLRLHRWFGLWSSENRRSR*

>peptide 3 (39 aa)
MHVSVKYFNCYEIIWILVSVLFYLIEFDEPAGCSLCVRK*

>peptide 4 (65 aa)
MHSPSQRLIGAEQIVAQRGKLCVVSPSSGISVVDVATVPPRILPIWLPEEFEPVVVHILNIFALF*

>peptide 5 (34 aa)
MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPC*

>peptide 6 (79 aa)
MKCPCVSLLSRCYVFLFLRHLFSFLCFCSYLCVCILIDRWVCIFAGVISGALLYIRDEFLAVDRKTWLHVTSLVSLFFF*

>peptide 7 (35 aa)
MSLCFTFISLLCFFISPPSFFIPMFLLLFVCVYFD*

Sequence

>CNT0001565
GAATTCTAACCCCATTCCAAACCTTTCCCTCAGCAATGGAATCCACCAAACTCCCGCGTCAATCTTCATTTCTTTAGACAGAGAGAGAAAGAGCGTGCGG
TGTCGGAATCATGTTCTCCGATTGCACCGATGGTTCGGTTTATGGTCGTCGGAGAATCGCCGATCTCGTTGAGAGTTTCGAATCGCACCGGTGACCGGAG
AAGATGGTGAATTCCATGGTGGAACGTGCCACGAGCGACATGCTCATAGGGCCTGATTGGGCCATGAACATCGAGATCTGCGACATGCTCAATCATGACC
CTTGCTGAAAATGCATAGTCCGTCTCAGAGACTCATAGGAGCCGAACAAATCGTCGCTCAGAGAGGAAAATTGTGTGTCGTTTCGCCTTCTTCTGGGATC
TCCGTCGTCGATGTGGCGACAGTGCCGCCACGGATTTTGCCGATTTGGCTGCCGGAAGAGTTCGAGCCAGTGGTCGTTCACATCTTAAACATCTTTGCTC
TATTTTGAATAGCATTTAGATAAGGAGATATGAAAATAAATCTTCGCAAGTTTGCATGATTTACTCCCTTCTATCTATTCGATGAAATGTCCCTGTGTTT
CACTTTTATCTCGTTGTTATGTTTTTTTATTTCTCCGCCATCTTTTTTCATTCCTATGTTTTTGCTCTTATTTGTGTGTGTGTATTTTGATTGATCGGTG
GGTGTGTATTTTTGCAGGGGTGATATCTGGAGCTCTTTTGTATATAAGGGATGAATTCCTAGCTGTAGATAGAAAGACTTGGCTTCACGTTACAAGTCTC
GTATCTCTGTTTTTTTTCTAGATATTGATCACATGCATGTTTCTGTTAAATATTTTAATTGTTATGAAATCATATGGATATTAGTTTCGGTTTTATTTTA
TTTGATTGAATTTGATGAACCTGCAGGTTGTAGCCTCTGTGTACGTAAATAACATTCACATAACAATTTTGCCTATTTTTTTTATCACTTTGTAGTCTGT
AGTTATTGGTTAATGTTCATATATATTGATTCCCTGGTCACTCATTTATATGATCCTTCTACCTTGAGAAAAATAAAGAATCTTTTGTTTAAACTAGTGC
TAGATGGACTGAGGTGATTCATTTTAACGATATATATGTGAATTCTTATACTTATCTATGTAGTATTCTTTTGATTATCTTTTACTCATATAATACTTCC
AAGAATTCCATCAAAGCTAAATCTTTCAAGGTAATTTAAGGTATTTAAATCTGTGATTGCAGTTCATTGGAATTTTTCAAGAAACAATTGTGCAAGAACT
GGTTGGGGAGCTGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAG
AAGGTTGGTAGACAAGGAGATCTAACTGGTTATAGAGTTTCTTGTCTC