Detailed information on CNT0001566 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001566

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)32.61633.8130.51711.60316.89131.96436.13523.8713.68119.49719.41517.21214.5510.9178.048leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01020302.557.512.51517.522.52527.532.53537.540

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MILSAYFVYWLFEIGAGICDMFGRLIDLLGCCFLVGFVLAMGALYRSSMMRGAAALCSFPSF*

>peptide 2 (37 aa)
MLTMCAASFHLNLQITHKLDSTCLILITGSFAAWILA*

>peptide 3 (31 aa)
MHSIKQQIINLAAKLRTFFHTQSFVHSTFPV*

>peptide 4 (76 aa)
MDLIEGYNKIWEGPHLLTQVQKLFFRYKNRAAYHFLGEGEWDIIILCLPLKDMYGSRSVDFSFMKFVMSFCRMRSS*

>peptide 5 (39 aa)
MLNTYYRKFCCMDSCLNPIFIYIRHTHIILYDSLSSSVA*

>peptide 6 (36 aa)
MKHLTVQRGIKRVTGQRRIRKRIEAKATAIRGRSIK*

>peptide 7 (145 aa)
MAASSSSLSASDDSSSHRRRRHHRHRRYRDKDSLKIRKKSKSQSQSRGERRRRHHRHSSDSDSYSSSSLSDYSRSESSSDSEHETSHRSKRHKKSDRPKK
NKEKDRSKSHRHKRQKHKVKEVGHFLMPCLLSSVGLFRIVCYSSY*

>peptide 8 (40 aa)
MRVFFLKILLHCIIEKQDIDITLEVREKEIKNWRESLASL*

Sequence

>CNT0001566
TTTTGGGGTTAGGTTCGCTTAGCCCATTTTGATATCTGAATGAGAGTGTTTTTCTTAAAGATATTGTTACATTGCATAATTGAAAAACAAGATATTGACA
TCACGCTCGAAGTAAGAGAGAAAGAAATAAAGAATTGGCGTGAGTCGCTCGCAAGTTTGTGATGGCGGCCTCTTCTTCCTCTCTCTCTGCCTCCGACGAC
TCTTCTTCTCACCGTCGCAGGCGTCACCACCGCCATCGCCGATACCGTGATAAGGACTCCCTCAAGATTCGAAAGAAGAGCAAGTCCCAATCCCAATCCC
GCGGAGAACGACGCCGTAGGCATCACCGCCACTCTTCCGATTCCGATTCCTATTCTTCATCTTCCCTCTCTGATTACTCCAGAAGTGAAAGTTCTTCTGA
TAGTGAGCATGAAACATCTCACCGTTCAAAGAGGCATAAAAAGAGTGACAGGCCAAAGAAGAATAAGGAAAAGGATCGAAGCAAAAGCCACCGCCATAAG
AGGCAGAAGCATAAAGTAAAAGAGGTAGGTCACTTTTTGATGCCATGTTTATTGTCTTCCGTAGGCTTGTTCAGAATAGTTTGTTATTCTTCATATTGAA
AGTTTTTAACTCTAGTAAGTGACCTTGAAATGTTGACTATGTGTGCGGCATCATTTCATTTAAATCTTCAGATTACTCATAAACTTGATTCAACATGCTT
AATACTTATTACCGGAAGTTTTGCTGCATGGATTCTTGCTTAAATCCAATATTCATCTACATAAGACACACTCATATAATTTTGTATGATTCCCTATCAT
CTTCTGTTGCTTGAAAACACTGGTTTGACATCATTGGTCCTGAACTAATAATGCATAGCATAAAACAACAAATTATTAATTTAGCTGCAAAATTGCGGAC
TTTTTTCCATACACAAAGTTTTGTACATTCCACTTTTCCAGTCTGAGATGGCTTATGATACTTTCTGCCTATTTTGTGTATTGGCTCTTTGAAATTGGAG
CTGGGATCTGTGACATGTTTGGGCGCTTGATTGACTTGCTTGGATGTTGTTTCTTGGTGGGGTTTGTCCTGGCAATGGGAGCTTTATATAGAAGCAGCAT
GATGAGAGGAGCAGCAGCCCTGTGCAGCTTTCCAAGTTTTTAGGGCATGACAAAGATGACGGTGTCCGTCGCAGTGCTGTATCTGGCAAGAAGATTCTTC
TGAAACTTGAGAAAACAAAGGAAGATAAAGTGGCTGAAAGCAAGAGAAACGAACTGCTGAACTTTTTAAATGCTAGTTTTGATTAGCATTGAGAAGGTAT
GGATTTGATAGAAGGGTACAACAAAATCTGGGAAGGACCACATTTACTTACACAGGTGCAGAAATTATTTTTCCGTTATAAGAACCGGGCAGCCTACCAT
TTCCTTGGGGAAGGGGAGTGGGATATCATAATATTGTGCTTACCATTGAAAGACATGTATGGTTCTCGATCAGTGGATTTCTCTTTTATGAAATTTGTTA
TGAGCTTTTGTAGGATGAGGAGTTCTTGACCCAACTGATTCCATACATGGTATTTTGAGATTGGGCAATCATTGTGTTATGTGCCAAGATATTTTTTTCT
TGTGTTGATTTGGGCACATGTGACTGAATTATTAAAAAATTTGTTCCCTTCTTGGTTTCCCCCCGATAATTGTTCTTAAAAATAGGTTTGGATTGAATTG
ATTCAACCTAAAGATCTTAGGTTCAATTCTTGTCCATTGTCCTTCATTGATATATCATTTGTAAGTACCAATATGATTCCACGTGGCATCCCTTGGACCT
TGGAATGGTGCAACCTCTCCTTTCTATACTATTTCTTACACTACAACAAATAATTATATTCAGGAAGGTAGTTATAAATACTAACTAGCTTGTTTTAAGG
GGAG