Detailed information on CNT0001568 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0016818, E-value = 7e-06 (S. tuberosum)

Expression of CNT0001568

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00001.4892.6722.9283.7260.4371.7470.190.830.71700leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.754

Peptides detected in this lncRNA

>peptide 1 (88 aa)
FVFAYTSPLKFPGKLAIDVLNNRLFISDSNHNRIVYYCKEDEVCLYQSLLFEVPFEEGVSNPAKADVTLAHFVKPETSTSNFLLSVTP*

>peptide 2 (32 aa)
MKFVCTSLCCLRSPSKREFLTLPKQTSLLHIL*

Sequence

>CNT0001568
TTTGTTTTTGCCTACACATCTCCATTAAAGTTTCCTGGAAAGCTAGCAATTGACGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCACAACCGCA
TAGTTTACTATTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCTTTGCTGTTTGAGGTCCCCTTCGAAGAGGGAGTTTCTAACCCTGCCAAAGCAGACGT
CACTCTTGCACATTTTGTGAAACCCGAAACTTCAACCAGCAACTTCCTGCTGTCAGTTACCCCCTGAGTCTGTGGCACCTTAAACCAGGTTCTTCTACCG
CTTCTTTCTCTTGCTCATCTTTTGTTTATTTTTCTGTATATACTAGTAATATTGTAATGCTTGAGAGTCATGATCTTTCTTTCTGATACAATCCATCATA
AGTTCATAACTAACAAAAATTAAGGCTTTTGTCTACCCTTTCTCGCTTCTTTGAAGATATCATTGTGTAATCATGCTAAATAATTTATTTTATTGGATAC
ATATATTCATTATTATAATGTTTGTTTTGTGGATAAGCTAGGATGGATTGTCTACCAAGTCGAACAGTCGTGCATAGCTATCCCTATCCATATTATGATG
GTTTGGTCACTTTGGTGGTCAATAATTGAACATATTTTTATATAAAGCAAATGCCGAATGCTTAGC