Detailed information on CNT0001577 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q7PC87|AB34G_ARATH, E-value = 2e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001577

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MNASSVQPVVAIERTIFYRERPAGMYYAFGQVQQQKKSDIKTPFSWI*

>peptide 2 (61 aa)
MLYVLYVIWDDDCSTNTRSPSCCNLYVLLLEFLDHCSLALSFLGRCVIIVILTSNSCVLEA*

>peptide 3 (118 aa)
MTNLHLSISVDKLRLHSNGKERKYIQTKNTSLIMQVPIEAIYNAVQTTIYSLILYSMTGFDWKATSFFWFYYYILICFMYFTLYGMMIVALTPGHQVAAI
CMSFFLSFWIIVLWLYHS*

>peptide 4 (38 aa)
MLHQCNQLLPLKELFSIVKDQQGCTMHLARYNSKRRVT*

Sequence

>CNT0001577
CGCAGAATGTGTTTGCTGCACTTAGCGAGTAAGGTAGTAACCTTGTGTTTAGCGCGTCATAATAAAGGTGACTCTTTTCTGAATTAGCTTGTTTTCCTCA
ATTAGCTTTCACTTTCCAGAATTATCTCCCTAGGCGCTAAGCATGTTGTTCCCGCTAAGCCTTGTACGCGCTACTGTGCTTCTTCATATTTCTAATTTGT
TTTTTTGGCTTTACTTTGTTCACTAAATATAATAAATTCATCAATTTTTAATATTTTCTACACAGAAACTTAAATAATATTAAAATAACAATTATTTGCA
CCAAAAGAAAGTAAGAGAAGAAAAAAATTATCAATTCTTATATAATTTAATCGCAAAATATACCTATAAATAGCAATTATCAACAACAAATTTGATGAAT
CTTTTGGGAGCCATGTACGTGGCTATGCTTTCTTGGAGCCATGAATGCTTCATCAGTGCAACCAGTTGTTGCCATTGAAAGAACTATTTTCTATCGTGAA
AGACCAGCAGGGATGTACTATGCATTTGGCCAGGTACAACAGCAAAAGAAGAGTGACATAAAGACACCTTTTTCATGGATTTAACAAAAAAAACTAACAT
ATTCAATTTGTTTTAGTTATTGAAGTTTAGTTTATGCTGTGTTTGAAATGACAAATCTTCATTTGTCAATTTCCGTGGACAAATTAAGGCTTCATTCCAA
TGGAAAAGAAAGAAAATATATCCAAACTAAAAACACTTCATTGATTATGCAGGTGCCAATAGAGGCAATTTATAATGCTGTTCAAACAACCATTTACTCT
CTTATCCTTTACTCAATGACTGGCTTTGATTGGAAGGCAACAAGCTTCTTTTGGTTCTACTACTATATTTTGATATGCTTTATGTACTTTACGTTATATG
GGATGATGATTGTAGCACTAACACCAGGTCACCAAGTTGCTGCAATTTGTATGTCCTTCTTCTTGAGTTTCTGGATCATTGTTCTCTGGCTTTATCATTC
CTAGGACGGTGTGTGATAATTGTCATTTTGACATCAAATTCCTGTGTGCTGGAAGCATGAAATTGAAGGAATTCCTTAAACAAAACTTGGGTTTTGACTT
CCGGTTGTTGCTGTTGCTCATGTAGGCTGGGTTATCCAATTTGTGTTCGTTTTTGCCTATGGCATCAAATTCTTGAATTGCCAAAGAAGATAGTTTCAGC
AAAGTCATATATATCAGTTTCAGGATAAGTGTAAATTTTTATTTATAGTATAGGAGTTCATGTGCTCATTACACTTCAGGAATCTCCACTCTGAGTAAGT
CCTACCAAAAGGGATTAGGAAATGAATATATAAATAGGTGAGCAAGTAGTTACCTGTGAAAGAACACTAAATAGGAGTCACAACCTTTAAAATAATGTGA
CAAGCTTACGATGCATGCATCCTGTTATGAGAGAATTTGTTTCACTTCCAC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G31440.2 Uncharacterized protein protein coding CNT0001577 131 155 CDS_UTR Trans
GLYMA11G20830.1 Uncharacterized protein protein coding CNT0001577 150 154 CDS_UTR Trans