Detailed information on CNT0001582 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q5M757|ZDH15_ARATH, E-value = 2e-76

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021956, E-value = 7e-08 (A. trichopoda)
CNT0009014, E-value = 7e-14 (S. tuberosum)

Expression of CNT0001582

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.3524.8513.9828.2364.828.1914.6463.6598.1558.6959.296.3658.2059.24510.443leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MHASLLLSNTTSVEVHEKKKGVRWMYDLGWKRNFEQVFGTKKALWLFPLFSKEDLDNIPALRGIEFPTRSDVDV*

>peptide 2 (54 aa)
MFDSDCFDYSYNLRTCDLKGTKCRFAFEEQNSFQVFDLSIIALFRGNAVYMVCM*

>peptide 3 (229 aa)
MRGEKEGVVAWDIWKRLFPARRSRSGWLPNIRMGNNINLFKLCSGLRVLGYLMILLFGAIVALTYYAVVFITWGPLLFFSSPLRIPSFFILLLFHTLLLL
LTWSYLMVLLNDPGPVPLNWIHLGSDSDPTSSPSYCSRCQNGKPPRCHHCSICQRCVLKMDHHCIWVVNCVGARNYKYFLLFLLYTFLETVLDCLALVPS
FIRFFAGSNNHSLSPGGFAVIFLASNCVP*

>peptide 4 (54 aa)
MGSLLVATTALFAKGAFSRWTIIASGSSIVLGHVTTSTFSSSCSIHSSRLSWIA*

>peptide 5 (102 aa)
MGPSPLLQLPSPHPLLLHPPPLPHPPPPLNLVLPHGPSQRSRPRSSQLDPSWLRFGSNILPLLLFSLPEWEASSLPPLLYLPKVRSQDGPSLHLGRQLCW
GT*

>peptide 6 (39 aa)
MKRKKELGGCTTWAGRGILSRFLALRRPYGCFHCFQKRI*

Sequence

>CNT0001582
GCGTGATTGTGATATGAGGAAGTTGATAAATTTATAGAAAAGAGAAGAGTAGGTATTAGTATTTTGGTGGTTCCATGGATCTCTGAGACGGTGATGAGAG
GAGAGAAGGAGGGCGTCGTGGCTTGGGATATTTGGAAGCGCTTATTCCCGGCACGAAGAAGCAGGTCGGGTTGGCTCCCAAACATAAGAATGGGAAACAA
CATAAACCTGTTTAAGCTCTGCTCTGGCCTCAGAGTCCTTGGCTACTTGATGATCCTCTTGTTCGGTGCTATTGTTGCCCTAACTTACTACGCCGTCGTT
TTCATCACATGGGGCCCTCTCCTCTTCTTCAGCTCCCCTCTCCGCATCCCCTCCTTCTTCATCCTCCTCCTCTTCCACACCCTCCTCCTCCTCTTAACTT
GGTCCTACCTCATGGTCCTTCTCAACGATCCCGGCCCCGTTCCTCTCAATTGGATCCATCTTGGCTCCGATTCGGATCCAACATCCTCCCCCTCTTATTG
TTCTCGTTGCCAGAATGGGAAGCCTCCTCGTTGCCACCACTGCTCTATTTGCCAAAGGTGCGTTCTCAAGATGGACCATCATTGCATCTGGGTCGTCAAT
TGTGTTGGGGCACGTAACTACAAGTACTTTCTCCTCTTCTTGCTCTATACATTCCTCGAGACTGTCCTGGATTGCCTAGCTCTGGTTCCTAGTTTTATCA
GGTTCTTTGCTGGATCCAACAATCATTCTTTGTCTCCTGGGGGCTTTGCAGTCATCTTTTTGGCTTCTAATTGTGTGCCTTGATGCAGTTCTTAATTTAG
CCTTCGCCCTCAGTCTTCTTTGTTTCGTTGTCATGCATGCATCTCTTCTGTTAAGCAACACAACTTCAGTTGAGGTTCATGAAAAGAAAAAAGGAGTTAG
GTGGATGTACGACCTGGGCTGGAAGAGGAATTTTGAGCAGGTTTTTGGCACTAAGAAGGCCCTATGGTTGTTTCCATTGTTTTCAAAAGAGGATTTAGAC
AACATACCTGCACTAAGGGGCATTGAGTTCCCTACACGTTCGGATGTTGATGTATGAAAGCTGGGTAGCTTATAGGTTTGAACATTTTTTTCATTAAATG
ATGTCATTTATGCTTACTTCATGACAGTGCAGCGTAGGGCATGAAAGTAATACTCTACTTGATTGCTGATGTTTTAAATTATAGAATTGTCCAGTAGATG
TATATATGTAATGTTCGATTCAGATTGTTTTGATTATTCTTATAATCTAAGAACCTGTGATCTTAAGGGGACTAAATGTAGATTTGCTTTCGAAGAACAA
AATTCATTCCAAGTGTTTGACCTGTCGATTATTGCACTGTTCCGGGGAAATGCGGTTTACATGGTTTGTATGTGAACTTGATTGATTGAAGTGGAACTTG
CATTTTTATCTGATTTCTTTTGTTGTACTCGTTGACATTCGTTGTAAAAGTAATTTAAGAGTTCATCCTAATATTATACTTGTGATGGTATTGCGAAGT