Detailed information on CNT0001593 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001593

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.2933.034400.23300.1140000.4160.1140.1960.6690leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MVFQKKDSESKMYLLGLHMFCEECVYMNGQLIILIYFLFAPFKLKGYYIFKRNEL*

>peptide 2 (36 aa)
LSFSILKATNFDVTHLLTPNSHPSLSVQESPAPLRT*

>peptide 3 (34 aa)
MIGYARGRRHCFLYFKMSHFTFANTSPFLLMGLL*

>peptide 4 (74 aa)
SHSLYSRPQTSTSPTCLLQILTLPSPFKNLLHLCVLKYRPFQNPNHSFESCNEEEHDAIVGIHGVVVVAVGGCY*

>peptide 5 (78 aa)
LILYTQGHKLRRHPLAYSKFSPFPLRSRISCTSAYLNIVPSKILITPLSLATKRSTMRSLASTVLSLWPSVAAISLVG*

>peptide 6 (37 aa)
MQHYCRIADFVMANSDPVLPTSKKNHPSCSFWKWLWL*

>peptide 7 (29 aa)
MCLCCNFDLCFMFCCRLAMILRWTHILHG*

Sequence

>CNT0001593
CTCTCATTCTCTATACTCAAGGCCACAAACTTCGACGTCACCCACTTGCTTACTCCAAATTCTCACCCTTCCCTCTCCGTTCAAGAATCTCCTGCACCTC
TGCGTACTTAAATATCGTCCCTTCCAAAATCCTAATCACTCCTTTGAGTCTTGCAACGAAGAGGAGCACGATGCGATCGTTGGCATCCACGGTGTTGTCG
TTGTGGCCGTCGGTGGCTGCTATTAGTTTAGTAGGTTGAGGTTTTTGTTTCTCTTGTCTTAGAAAGAGTGGAGAGTCATGATTGGGTACGCTCGTGGAAG
GAGACATTGTTTTCTCTACTTCAAGATGTCCCACTTCACCTTTGCAAACACGTCTCCATTTCTATTGATGGGACTTCTATAACTATTATCATTGTTGATA
GGTGGATCAATTTTTTGTTTTAAATTTTAATATTTCTGTTAATTAAAGATTAAGATTATTGTGTATTTGAATTCTGAAGTAGGAATACGAATCTGGTGTT
GCAGTGACACGGGAGAACCGTTGTGGAGACCTTTACTTCACTATTGTGTTTTTCACAGCTAGGAGATTTATGTGTTTGTGTTGCAATTTTGACCTTTGTT
TTATGTTTTGTTGTAGATTGGCTATGATCCTGAGGTGGACTCATATCCTTCATGGCTAGTCTCTCAACTCATATCCTGAGGATTGTTAATTGAATGCAAC
ACTATTGCAGGATTGCCGATTTTGTGATGGCAAACTCAGATCCAGTTTTACCTACGAGCAAGAAGAACCACCCGTCATGTAGCTTCTGGAAGTGGTTGTG
GTTGTGAATTTTGAGTATGTTGATGAGAGGAGGCAACACAAAAAAGAACAATGGAGACACTTTAACAGTTCAAAAAGGACACATTTGTAGGAGTTGTTAA
GAGACAAGTATCAAGAGGATAAAGTTGAGGAGTTGTTAAGAGACAAGTATCAAGAGGATAAAGTTGAGGAGTTTAATGCCTTGGGCAAGGGGAAGCCAAA
CCGAAAGTTGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCACATGTTCTGTGAGGAGTGTGTATATATGAATGGTCAA
TTAATAATTTTAATTTATTTCTTGTTTGCTCCTTTTAAATTGAAAGGTTACTACATATTTAAGAGAAATGAGCTATAGGATTCTAAAAGTATTAGATAAT
TTTTTAAGGTGAACTAGC