Detailed information on CNT0001605 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O82702|VATG1_TOBAC, E-value = 9e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001605

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)9.51210.2449.74929.01316.713.2986.5715.0619.56310.88213.0118.7379.25521.63216.38leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02468101214161820222426283032

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLQKMVFPIFVSLYPFGIGLFIFIYGSQLLFYEGYGLALCPHACESKF*

>peptide 2 (56 aa)
MASNRGQGGIQQLLAAEQEAQRIVNAAKNGISYFCLPLSLWHWSFHFHIWVSVIVL*

>peptide 3 (30 aa)
MVYSFVNTILFSYQIMAFVCLISCWRKFYN*

Sequence

>CNT0001605
ATATGGTTTGTGAGTAAAATTAAATTATATATGTGTGATTTATTTATTATTAAAGAAATAGGTGGGTTGTGTTGATTTGATTGGGCGAAGACGAAAAGCA
AATCAGCGAAGCAGTCCTCCAGTTTTCGTTAGAGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACGAATGGCATCCAACAGGGG
TCAAGGTGGAATTCAACAGTTGCTGGCTGCTGAACAAGAAGCGCAAAGAATTGTCAATGCTGCAAAAAATGGTATTTCCTATTTTTGTCTCCCTTTATCC
CTTTGGCATTGGTCTTTTCATTTTCATATATGGGTCTCAGTTATTGTTTTATGAGGGGTATGGGCTTGCTTTGTGTCCTCATGCATGTGAGAGCAAATTC
TGAGCTATTGCTATGATAAACTAGTCTCTTTCCCCTCCCTACCTTTATTGTACTATTGTACTCCTATTAGGTAGAATCTATATCGAATATCTTTATTGGT
AAACTAACCAGTATCAGTATTCTGGATCTACTGTTAAGAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAAATTGCCGAGTATAGG
GCTCAGTTGGAGTACGAGTTTCAAAAGAAAGTGTCACAGAGTAGTGGAGATTCTGGTGCTAATGTGAAGAGACTTGAGCAAGAGACAGAAGAAAAGATTC
ATCACCTGAAAACTGAGGCTGAGAGGATATCAGGGGATGTTGTCTCCATGCTCCTCAAGCATGTAACAAGTGTGAAGAATTAGAGAAATATTGGTGCTGG
GGAACTCTTAAGTTATGCAGAACAGTATATCTCATTTATATTGTGTTTATTGTTGATTCTAGATCCTGGCGCTGATAGATTCTTGCTTTTTTGTTGGCTA
TAATACGTGGTACCTTGCTGCCATGTATTAAAAATAATTTCTGAGTTTTTAAAAATAAACAGTTAAGAATTCATAGGCATGCCTATATGTATCACCGTTT
CAATAGAGGTCTGAGGATCACTTTGTCAGTGTATATTGAGTAAAGCCGGGACGAATGGTTTATTCTTTTGTAAACACCATCTTATTCTCCTACCAAATCA
TGGCTTTTGTATGTTTAATTTCATGTTGGAGAAAATTTTACAATTGATTGTGGGTTAAAATAATTTTAAGTAATTTCAGTATTAAAT