Detailed information on CNT0001611 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0PGJ6|AKRC9_ARATH, E-value = 4e-33

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001611

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MNSHISKYNTCIPDRGQDSQVAIPVMFYPMLLAHLLVHDLNT*

>peptide 2 (34 aa)
QRLKDAYCSEFTIPEVFNAPIGTIGLVNKKTGLN*

>peptide 3 (38 aa)
MTCLQAPSKGNLCLCLPQSLCNLCDNRILKNITFESCW*

>peptide 4 (33 aa)
MSGCSRYSLLNPNVPLFMRTGQWIYSRNQFSLF*

>peptide 5 (33 aa)
MNFFRFTKCAQLWLLPSWVQFHLVNSRNHSCYI*

>peptide 6 (33 aa)
MKFVLPTKFFLFTKLKHESLLEGSESYLTNFHL*

>peptide 7 (33 aa)
STSQRCILLRVHHPRSLQCSYRHHRSREQKNWP*

>peptide 8 (31 aa)
MRITDALCSKRNFNLKHLGAEKTFLFLLFSV*

Sequence

>CNT0001611
TCAACGTCTCAAAGATGCATATTGCTCAGAGTTCACCATCCCAGAAGTCTTCAATGCTCCTATAGGCACCATAGGTCTCGTGAACAAAAAAACTGGCCTT
AACTAGCCTTTCCTGCATGAGTAAACTCCATGTGTTAACTAGCATTTTTGTTGATGTAGTAAAAGATGTATAGGAGATAGTAAGAATCAAGAAAAAGAAC
AAAAAAGAATATCATACGAAGTATCTAACTACTTGCCTGCTTAATTTCAGAGATCTTGGTCATCAAATCTTGAGGAATAGACCAGTCAAAGATATCAAAA
TTTCCCTTGATTCTGGACTCATTAGTGCTCTTAGGAAGCACACTATGACCTGCTTGCAAGCCCCATCGAAGGGCAACTTGTGCTTGTGTCTTCCCCAATC
TCTCTGCAATCTCTGTGACAACAGGATTCTTAAGAATATCACTTTTGAGAGCTGCTGGTGAACCTAGTGGAGAATATCCCTGAAAAGAAATTCATCATAT
ATACTCCATCTTTGAGTGCACACCGAAATCATTTTCAACTAGCTCAAGACAATTTCACCAAAAGTGATAATTTTTCTTTGCAATTGATAGTTGAGAAAAT
GGATTATATACTGACAATTAAAGTAATTTTACATTATCATTCAATCACAAAACACCATGTATAGTGAGTTTGTTGACTTTTGTGATAACTACTTTAAAAG
TCATACCAACACTCAGTTTTAATTAGTTGACAATGCAAGCTTACTTTACATTGTGAGTGCATCACCATTAAATTCTTGATAATTTAGGAATATCAAGTCT
TTTAAGTGAAAGTATATATCATATATGCCATACTTACAGATAGATGAATTTCTTTAGATTCACAAAATGCGCGCAACTTTGGCTGCTGCCATCCTGGGTG
CAATTCCACTTGGTTAACAGCAGGAACCACTCTTGCTATATCTAACAAATCTTGAAGCTTCTTTGAAGAGAAATTGCTCACTCCTATGGCTCTAGCCTTG
TCTGAGTCATAGAGTGCCTCCATTGCTCTCCATGTATTGGGAATGTCTGGTTGCTCAAGATATTCTTTATTGAATCCAAATGTTCCACTTTTCATGCGGA
CTGGCCAGTGGATCTACAGCAGAAACCAATTTAGTTTGTTTTAAGACAGAATAATTGATGAAAATGAAATCAACCCCTGATAACTAAACTCTGCATTACA
TGAATGCGTATAACCGATGCACTTTGCTCAAAGCGTAATTTTAATTTAAAGCACTTAGGGGCAGAGAAAACGTTTTTATTTCTCCTATTTTCAGTTTAAA
ATACTATCAAGTTACCATGTTATTACGTTAATCAACTTTGTTGAGGACTAATTTTTGCCGTTGAAGAACCTGACTAGCCACTTTTAGTGAAGTTTGTCCT
CCCAACCACATTTTTTCTATTCACAAAGCTTAAACATGTGACCTTGCTTGAGGGGTCAGAATCCTGTTTGACTAATTTTCACCTTCGAGGAACCTGACTA
GCTAGCTACTTTTAATGAAGTTTGTCCTCCCAACCAAATTTTTTCTATTCACAAAGCTTAAACATGAGAGCTTGCTTGAGGGGTCAGAATCCTATTTGAC
TAATTTTCACCTTTGAGGAACCTGATTAGCTACATTAATTAAGTTTTTCTTCTTAATCACGTTTTTTTTCATTTGAAAAACTCTAACATAAGAATTTACT
CGAGGAGTCCAAACCTAGTTCCACTTGAAATAGTTGGTTCGAAAGTTTTTCATTCAAAAAGTAAAAATGAATGTTTCCTTGTACTAAACAAACCCTTAAT
CTTCCCCCAAATTTTCAACATGAATTCACATATCAGTAAATATAATACATGCATACCAGATAGAGGTCAAGATAGTCAAGTTGCAATTCCTGTAATGTTT
TATCCAATGCTTTTGGCACATCTTCTGGTGCATGATCTGAACACCTAAAAATATAGCCAACAAATCAAAGGATCCTTCATTCAGCAACCAAACTGGTCCA
AACACATACAATCTTTCTCAATATTCAAAAAGAGATCACAATTACTAAAAGACAACAAACCAGAGTTTGGAAGTGATCCATAAGTCCTCACGCTTCACCA
CACCATCATCAAAAAGCTTCTTAAGAGCAGAACCAATCTATAAAAACCAAAATTAAAAAAATAAAATGTCAATTGGCTAGCAAAAAAATTACTGTTTTCT
AGCTATTTTGCAAAACAAAAT

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G24915.1 Uncharacterized protein protein coding CNT0001611 100 86 CDS Trans
GLYMA01G24931.1 Uncharacterized protein protein coding CNT0001611 714 357 CDS Trans
GLYMA01G24931.1 Uncharacterized protein protein coding CNT0001611 611 283 CDS Trans
GLYMA01G24931.1 Uncharacterized protein protein coding CNT0001611 249 138 CDS_UTR Trans
GLYMA01G24931.1 Uncharacterized protein protein coding CNT0001611 604 362 CDS Trans
GLYMA01G24960.1 Uncharacterized protein protein coding CNT0001611 194 178 CDS Trans
GLYMA03G11580.1 Uncharacterized protein protein coding CNT0001611 742 283 UTR5 Trans
GLYMA03G11580.1 Uncharacterized protein protein coding CNT0001611 3683 1363 CDS_UTR Trans
GLYMA03G11610.1 Uncharacterized protein protein coding CNT0001611 3710 1363 CDS_UTR Cis
GLYMA03G11610.1 Uncharacterized protein protein coding CNT0001611 1626 615 CDS Cis
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001611 265 133 CDS Trans
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001611 408 199 CDS Trans
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001611 757 355 CDS Trans
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001611 581 283 CDS Trans
GLYMA03G18430.1 Uncharacterized protein protein coding CNT0001611 222 138 CDS_UTR Trans
GLYMA14G35310.1 Uncharacterized protein protein coding CNT0001611 101 80 CDS Trans