Detailed information on CNT0001622 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FY84|PEN2_ARATH, E-value = 7e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001622

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.5552.052.09513.7523.5612.1182.9482.7648.85511.39113.0616.7679.16111.32212.424leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MHLHYLYILLYSIMKLVVNFILLPQLIDNKQCFGRGYSSWCLYFICMCVCVLYY

>peptide 2 (104 aa)
MEAQSQSNNPNPNPNPNPNPNPNPNPNPHRNNSVASSMPLWPTIDGPLGLSEEESVGYARRCCWICNWVCSMCDTSQFLESNICHWRGTPLRPCLGSIGY
VQSC*

Sequence

>CNT0001622
TGCTACTTTTTGTGTTTTCGATTCGAACACGGAAACAGATAAGATTTAAGACAATGGAGGATTAATCTGAATTTAAGTCCCGCTGGTCTTTGTAATTACT
ACGCCATATCAAGCAAAATCGAAGAAACGCGACGATCCACTTGCACAGTAAAAATCCGCGGTGGAGGCAGATCACATAGATGGAGGCACAGTCTCAGAGC
AACAATCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTCATCGGAATAATTCGGTAGCGTCATCGATGCCGCTGT
GGCCAACGATCGACGGCCCATTGGGCCTGTCGGAGGAAGAGTCAGTGGGCTACGCTCGCAGATGTTGTTGGATCTGCAATTGGGTTTGCAGTATGTGCGA
CACTTCTCAGTTCTTGGAGTCTAACATTTGCCATTGGAGGGGAACGCCTCTTCGGCCCTGTTTGGGATCAATTGGTTATGTACAATCTTGCTGATAGGTT
AGGCTTAACAGGTTGGAGCTAGTTGTGTGGCACCTCTGATACAAATATTTTGATCTTTTATTACCACACTTACCTTCTTCCCTGTTTTTTGAATGCATCT
GCATTACCTATACATTTTACTATATTCTATCATGAAACTAGTAGTGAATTTTATCTTGCTGCCACAGTTGATAGATAACAAGCAATGTTTTGGAAGAGGA
TATAGTTCTTGGTGTCTTTACTTTATTTGTATGTGTGTGTGTGTGTTATATTATGT