Detailed information on CNT0001627 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001627

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.9372.3312.7130.7060.770.6770.2270.5680.6321.3910.6191.5770.7130.8860.448leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MIIESSFSTYGRILTSHRSRLHLDTLEAD*

>peptide 2 (36 aa)
CKQILTIRGNGFFNYPFLPVLRVPAISYRTMAEWIS*

>peptide 3 (44 aa)
VNRYSLSEETDFLTIHFYLSSGYPLYPIARWQSGYHNTLIYITS*

>peptide 4 (33 aa)
MEPERVLPDKPIVIYIWDIIRAARKLGLIARGR*

>peptide 5 (59 aa)
MTAAPRKGPRTTSSSHNLVITAAPHTSNTVTNLLTTSTHMYISIQFLFSSTMSFALLIL*

>peptide 6 (48 aa)
MAQLQCPTGHSLTLSPHRHKALPPGNAPPQSIAALHPILRHCQHSTPS*

Sequence

>CNT0001627
TGTAAACAGATACTCACTATCCGAGGAAACGGATTTTTTAACTATCCATTTTTACCTGTCCTCCGGGTACCCGCTATATCCTATCGCACGATGGCAGAGT
GGATATCATAATACCCTCATATATATAACGAGTTAGGCTTTGGAAAAAACCGTACTCTTTTCACTCACACTTTGCGCATGGCGCAGCTCCAGTGCCCCAC
AGGCCACAGCCTCACTCTCTCACCGCACCGCCACAAAGCACTGCCACCCGGCAACGCACCGCCGCAAAGCATCGCCGCTCTGCACCCCATACTTCGACAC
TGCCAACACTCAACACCGTCATGACCGCTGCACCGCGCAAAGGGCCGAGGACAACCTCCTCTTCTCACAACCTCGTCATCACCGCCGCACCCCACACTTC
CAACACCGTCACCAATCTTCTCACAACCTCGACGCACATGTACATCTCCATTCAATTTCTATTTTCTTCTACAATGTCCTTCGCCCTCCTAATACTATGA
TTTGGGGGATTTGAAACTTGGTTCTGGTGTGGATGAGGTAATTAGCAATTTAGCATTTAGAATTTGAAACTTGGGGGATTTGGGAATTTTAGGGCTAAAG
TTTCGAATTTTGGATTGGCAAGAGCTGTGGAGGATCACTGGGATAATGGTGGTTTCAATTGACAAGGCATTCTGACTAATAAAAAAAAAGTACACATCAA
CGTGGCATCTCCGCAATTTTTCTGATATTAATTAATTTCTCATTTGTTCTTAATAGATTAAAAACGTAAAAAGTACTCAACTGTAGTATTGACTCGTAAA
ATGTATGTTATGTAATCCTTACATTTTAATGAGAAATATACTTCATTGTATATAATTATATTATATATACTTGCACATGTTAAAAATTAACCAACACCAG
CACACAACACCTTAAATCATGAATTAATGCAGAAAGAAGGCACTGTACAAAAAGGGGGAATGGAAAAGAAAGCAATCTATTTCCCCTAAATGGAACCTGA
AAGGGTCTTGCCTGATAAGCCTATCGTGATATACATTTGGGATATTATCAGGGCCGCCAGAAAGTTGGGATTGATAGCTAGGGGTAGATGAGTATAGCTA
GCAACTTCTCAATGACTTGCACTTAAGTTCAGATTCTGAACAACCAGAAATGGTTCACATATACAACTGACAGGAGATGAAAGGGAAAATGAAATGAACA
ACAAAGGCATTGCTTTTCCTGATTTCTGCTAAGAGTGTGCTTGAGCATGCTTAGGTTTCTGATGGCCAAATCTCCTATAGCTGATAGATAGATGATGATT
AGATGATCATTATGGTATTGCTCAATTGCTTCGATGGAACAAGATATTCTTTTTTAATCTTGTAATTGCTGAGTTTTCTTTTGGCCTCTTTTTTAATCCT
CTACTACAAATGTTAAATTTTCATGTTTCTCCTGTATAGCTTTCATTTTTATATTTACCTCTTATGAATTATTATACTATTGAAATGAAGTAGTCCATGA
CCTTAGGTTGATGGTTTCATTCACGGAAATGGGTCAAATTTATAATGATTATTGAGTCTTCATTTAGTACATATGGTCGTATTCTTACTTCACATCGTAG
TAGATTACATCTAGATACTTTGGAGGCAGATTGACTTTGGACCGACATGGAAGGCTCAACTAAATCAAAGGTGGACAAAATGTTACTCCAAAAAGTGTTT
GAGGAAATAGTTGATGATTGACCAAAGTGAGGTTGTTGAAGAGTAAAGTTGAAGTTGTTTAGATTTAAGGAATTGAAGTTGAACTTCTTTTATTGGACTT
ATGTTGTAGATAGATTAATTTTATTTGAACCAATGTTTTAA