Detailed information on CNT0001630 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M2A0|PMA8_ARATH, E-value = 9e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001630

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)16.7669.46712.98325.1225.32914.6923.28515.42100000.12537.90423.761leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02.557.51012.51517.52022.52527.53032.53537.540

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVYSSIPSMPVAGGDAMLFRYQITWLIGFTCILFWEC*

>peptide 2 (33 aa)
MVLMYVSFSFSFSFSWARYMFLLSEAMYPAKFYK

>peptide 3 (45 aa)
FNWTTLKAPTEYYMLRELHTLKGHVESVVKLKGLDIDTIQQHYTV*

Sequence

>CNT0001630
TTTTAATTGGACAACACTAAAAGCACCTACTGAATACTATATGCTCAGGGAGCTTCATACTCTGAAAGGACATGTTGAGTCAGTGGTGAAGCTGAAGGGA
CTTGACATTGATACAATCCAACAACATTATACAGTTTAAGGAGTTTAGATAATTCATGCAGAACCCGCTTTGGTGCTTGTCCAAGAACAAGAACAACAAA
TATAATGAAGACCGAAGTTAATCCGTCTATAAATTAGGATGAAGGTCCTTTTGTCAAAATCTGAATGGTTTACTCTTCTATTCCATCTATGCCAGTAGCT
GGAGGAGATGCTATGCTCTTTAGGTACCAAATAACGTGGTTGATAGGATTTACTTGCATCTTATTTTGGGAATGTTAATGATACCAAGGTCACTAAAGCT
CTATATATTTTTTTGTCTGATGAACAAAACTCAATATATTTTCAATCTTGATTAATGTTGCTCAATAATGAGTTCAGTCTCCATGTTTCTTTTTTACCTT
CGTTCATGTCCAGCCTAAAAAAATGTGAGTGGTAGAAGCACGATGTATACACTCCACCATTGAAATTAAATAGAAAAAATATTTGATCATTAATGAGAGG
AAAATAAAAGGAGTGATACAGTTAAACCATTGTGCTGTGTTGTTGGATGAGAATAAGTTCACAAGGTTGAACAGACATATTACTGGGTTTCAGGAAGTTA
ATAAAATAAATCTTCTTGCTCATTATAACTGATACCTGAAAGAGTAATCATGTAAGAAAAGTGCTAATCTGATATCAAGATAAAGGAAGATCGACTCTGA
TACTGACATTTAAATAGATTCCCCAATTATACCTCACCAACTCCACTGCATAAGATGGTCCTCATGTACGTTTCTTTTTCTTTTTCATTTTCATTTTCAT
GGGCTAGGTATATGTTCCTCCTGTCTGAAGCCATGTATCCAGCTAAGTTTTACAAGG