Detailed information on CNT0001633 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4KFG5|TPPI_ARATH, E-value = 7e-21

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0017067, E-value = 3e-07 (S. tuberosum)

Expression of CNT0001633

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0002.1113.2223.2382.7153.2254.6336.24.6894.0434.0353.9723.105leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.57

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVHAYHCYCLQPPHKSVCNGPYLCTKHVRCHRCGSNVPGNGLSVRYEF*

>peptide 2 (58 aa)
MPIGMLQEECLVSFMVKTYTPGRNQAKMFRWICINYYLYFICYSCISSTFAMKLQYAQ*

>peptide 3 (62 aa)
MTFTYTLYIVGKTYSDKQLAVIICPLKVDRRNVCRTKSIIHLPMDFLFIVTVFVRRYRSFFL*

>peptide 4 (43 aa)
MKKGRDILQINHPVGPFGTKPYNCKKNPRLYLLLITNHIIVEN*

Sequence

>CNT0001633
CGCATTGTATGGACTATAATTGCTTTATCACCCTTCAGCTCTGAACACCTTTGAACAGATAGTATATAGTGCCAAAGGAAAGCAAATTGTAGTTTTTCTT
GACTACGATGGAACTCTCTCTCCAATTGTTGTAGATCCAGATAAGGCTTTCATGACTAGAAAGATGAGAGCCACACTAAAGGGTATAGCAAGACATTTTT
CCACAGCAATCGTGACCGGAAGGGAGCATAGCTAGAAGATTTATTATTATTATTATATGATTTTTACCTACAGTTGAAGATGATATGTACATATTAAAGA
CTTTTACCTACAGTTAGGAGATGTAAGTAGAAGTTAATGACTTTTACCTACACACTATACATAGTAGGTAAAACCTATAGTGACAAACAATTAGCCGTCA
TTATATGCCCCCTCAAAGTTGACAGAAGAAACGTCTGTAGGACAAAGTCTATCATACATTTACCTATGGATTTTTTATTTATAGTGACAGTTTTTGTCCG
TAGGTATAGGTCATTTTTCTTGTAGTGTGAGCTGATAATTTTTTTATTAGTTAACTGAATATTATATGAAAGCACTTGTTCATGAGACGTCAAGAGAGTA
GATTCTTTCCTTATCTTTTAACCATGATCCCAACCTAATTGATATGGTGACTCCATAGTTTCTAATTAGTAATTGCATATTATATGAAAACGCTAGTTCA
TATAGACTTTAAAGAGAGTGCATTATGATTGACCTTTCCATTACCTCAAAAGTTTCTATTTCAAGGTATTGTGTCTAATATCCAGATTTCCTCAGGGGAT
GTGGCTTCATTTCCCTTGAAAATCTATTGTTTTTCACAAGGAAATATCCGGTATGCATTTTTGTCTTCTATTCTGCACATCTGAAAGAACTTGATGAGCC
TTAAAAGTTGTAATTGGCAGGTGGTATGATACATGCAGGAGCCATGCTCATGTGGGATCTGCATATATATGTGATGGTTGGTACTTGGTGATATAGATAC
TGCATTGGACTATGAAGAAGGGAAGGGATATTCTTCAAATAAACCATCCCGTCGGCCCTTTTGGCACAAAGCCATATAATTGCAAAAAAAACCCAAGGCT
TTACCTCCTCCTTATCACAAACCATATTATAGTGGAGAATTGAAGCAAAAGGTGTGATGGTGCATGCTTACCACTGTTATTGTCTTCAACCTCCACACAA
GAGTGTTTGTAATGGGCCTTATTTGTGCACAAAACACGTAAGATGTCACAGATGTGGATCCAATGTCCCTGGAAATGGACTAAGTGTGAGGTATGAATTC
TGAATAATTTAGCTTTGGTTTGATGTCTGGTGTTGGTGTGCCTAGTGTTGATGCCCATAGGAATGTTGCAAGAGGAATGCTTAGTTAGTTTTATGGTCAA
AACATATACCCCTGGTAGAAACCAAGCAAAAATGTTTCGCTGGATTTGTATCAATTATTACCTTTATTTTATATGTTATAGTTGTATATCATCAACATTT
GCCATGAAATTGCAATATGCTCAATGAGTTTCGAAAATG