Detailed information on CNT0001645 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8RWJ7|SHH2_ARATH, E-value = 5e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001645

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4620.4950.3790.6740.8820.9232.0231.3552.5664.3461.7072.7251.7341.6910.855leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.75

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MYCDKTSARKFSLNRPGSTGLGLQFSGWSTDVLVLIHSSSSTLNSTNMTWTS*

>peptide 2 (59 aa)
MHILSLLVVFQQLKKCELHHMDVHNAFLYDDLDEEMYKMSSGFHSHMEKFVAHKSHYMI*

Sequence

>CNT0001645
GGACGATGTCATGGTTTCAGCCAAAATAAAGTAGCACTCCCAACCAAAACTTAAGTGGACACTGGACAGGGAAAGGGCTTTACATGTTTCAGCTATGAAA
TGTGGATGAACGAGCACGATTCTCAATGTCAAGTGCTAGTTGCTTGCACCCAGGTCGTTTGCTGACTGTTTGAAAGCTCACCTTGAATGTCAAGAAGAAT
TGATCCCAAATACGCCTAAGATTGATCTGTGGCAAAGTCTCCTCAAGCGAACTCTTTCCTGGAAACGGTAAACATAACATTAAAAACTTGTAAATTACGC
ATGAAATGGGAAACGCAAGCAGATGCAGAAGTAATATGCACCTCACTGTTGTCGTGACCATAACGAATTAAGATGTTTTCTGCAACCTCTAATATCTTGC
ATTATCCTTTGTGTCTCTAGAATGTGAGCATCATAGTAAATTGCTTGGTCTCTCCTATCCTAAAATCCAATTGAAATTGTTGATACTGTGATGTACTGTG
ACAAAACTTCAGCGAGGAAATTCAGCCTTAATAGACCTGGAAGCACAGGACTGGGCCTCCAATTTTCAGGTTGGAGTACTGACGTTTTGGTATTGATCCA
CTCATCTTCCTCAACTCTAAATTCAACAAATATGACATGGACTTCCTGATTGTATGCACATACTATCCTTACTAGTAGTATTTCAGCAACTAAAAAAATG
TGAACTACATCATATGGATGTTCATAATGCTTTCTTATATGATGATCTAGATGAGGAAATGTATAAGATGTCTTCGGGATTTCATTCTCACATGGAAAAG
TTTGTCGCCCACAAAAGTCATTACATGATTTAAAACAAGCATCCCAGTATTAGTTAGCAAAGTTGGTCCGTGCTTTGAAACAATATGGTTTCAAGCAATC
ATACTCTAACTACTATCTTTTTGCTATGCAACATGACAATCTGCAACTTAATGTATTGGTCCAC

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G09100.1 Uncharacterized protein protein coding CNT0001645 868 534 CDS_UTR Trans
GLYMA04G09100.2 Uncharacterized protein protein coding CNT0001645 868 534 CDS_UTR Trans
GLYMA04G09100.3 Uncharacterized protein protein coding CNT0001645 868 534 CDS_UTR Trans
GLYMA06G09200.1 Uncharacterized protein protein coding CNT0001645 789 536 CDS_UTR Trans
GLYMA06G09200.2 Uncharacterized protein protein coding CNT0001645 789 536 CDS_UTR Trans