Detailed information on CNT0001646 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001646

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MHILSLLVVFQQLKKCELHHMDVHNAFLYDDLDEEMYKMSSGFHSHMEKFVAHKSHYMI*

>peptide 2 (53 aa)
MKHFQVLLHFFFLYVWKSRFRIIVVGDAMITCLRDVLDLREAFNRVYKGSYSG*

>peptide 3 (52 aa)
MYCDKTSARKFSLNRPGSTGLGLQFSGWSTDVLVLIHSSSSTLNSTNMTWTS*

Sequence

>CNT0001646
CTAAAACAGAATGAAACATTTTCAAGTTTTATTACATTTTTTTTTTTTGTATGTTTGGAAATCTAGATTTCGAATCATTGTTGTCGGTGATGCAATGATA
ACATGCTTAAGAGATGTCCTTGATTTAAGAGAAGCTTTTAACAGAGTTTATAAGGGAAGTTATTCGGGGTGATGCAATGATACCCACTTAACCGTCAGCA
TCCTTGCCTTGGGTTACGATGGCGACTAATGGAATATATTGATGGGGGTCCTGCGGGAAAGAAAATCCTTAGTTTAATGACAATATGTTAATTATACGCG
ATGTTTGTGTCAACAAGTGTATGGACTAAAGGCATTTTATGCTCTTTATTTGGTCAAGTCATTTTATGTTTTTGAGTTATCTGTTTGGTTAGGTGACCCG
CGGCTATTCAACAATCTGAAGGGCAAAAGTCCAGATTGATATGTCACTCCCAACCAAAACTTAAGTGGACACTGGACAGGGAAAGGGCTTTACATGTTTC
AGCTATGAAATGTGGATGAACGAGCACGATTCTCAATGTCAAGTGCTAGTTGCTTGCACCCAGGTCGTTTGCTGACTGTTTGAAAGCTCACCTTGAATGT
CAAGAAGAATTGATCCCAAATACGCCTAAGATTGATCTGTGGCAAAGTCTCCTCAAGCGAACTCTTTCCTGGAAACGAATGTGAGCATCATAGTAAATTG
CTTGGTCTCTCCTATCCTAAAATCCAATTGAAATTGTTGATACTGTGATGTACTGTGACAAAACTTCAGCGAGGAAATTCAGCCTTAATAGACCTGGAAG
CACAGGACTGGGCCTCCAATTTTCAGGTTGGAGTACTGACGTTTTGGTATTGATCCACTCATCTTCCTCAACTCTAAATTCAACAAATATGACATGGACT
TCCTGATTGTATGCACATACTATCCTTACTAGTAGTATTTCAGCAACTAAAAAAATGTGAACTACATCATATGGATGTTCATAATGCTTTCTTATATGAT
GATCTAGATGAGGAAATGTATAAGATGTCTTCGGGATTTCATTCTCACATGGAAAAGTTTGTCGCCCACAAAAGTCATTACATGATTTAAAACAAGCATC
CCAGTATTAGTTAGCAAAGTTGGTCCGTGCTTTGAAACAATATGGTTTCAAGCAATCATACTCTAACTACTATCTTTTTGCTATGCAACATGACAATCTG
CAACTTAATGTATTGGTCCAC

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G09100.1 Uncharacterized protein protein coding CNT0001646 286 166 CDS Trans
GLYMA04G09100.2 Uncharacterized protein protein coding CNT0001646 286 166 CDS Trans
GLYMA04G09100.3 Uncharacterized protein protein coding CNT0001646 286 166 CDS_UTR Trans
GLYMA06G09200.1 Uncharacterized protein protein coding CNT0001646 253 166 CDS Trans
GLYMA06G09200.2 Uncharacterized protein protein coding CNT0001646 253 166 CDS Trans