Detailed information on CNT0001648 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001648

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.0913.1314.1145.4861.9940.1671.0452.2053.0034.5853.3252.5942.6886.8827.11leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.5

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVLDQFQMFGMSKTVAEGHSNASKEIQSSLHLQTTVQD*

>peptide 2 (84 aa)
MSLTIKVYKQHPDKYYLYHLSSNDTNSTLTNSIYFTKIGTRPSHWHSTSIYNFNVSSSVSRHRKVCGFSLNQFRSHPTRKFVQS*

>peptide 3 (42 aa)
MPLESWRAWTLRKANLKSSLHPLQLPHLLLHAKRRRMKKLLS*

>peptide 4 (40 aa)
MLTLHQNLKTFIFKSTCLDTAPKLQYNFSVSTLGCSAALNS

>peptide 5 (29 aa)
MLPKKFKVLCIFRQLYKTRFLAFEPLNFN*

>peptide 6 (66 aa)
MDTQKSQPEKQSSSAATAPSVTSCQKKKNEEAAFLDDLKDHIDEFIKASMDEHKSCFKKIIQKVGT*

Sequence

>CNT0001648
ATGTCACTTACAATAAAAGTATACAAACAACACCCTGACAAATATTATTTATATCACTTATCGTCAAATGATACAAACAGCACCCTGACAAATAGTATTT
ATTTCACTAAAATAGGGACCCGTCCATCGCACTGGCACTCCACTAGTATATATAATTTCAATGTCTCCTCCTCTGTGTCTCGCCATCGCAAAGTTTGTGG
TTTCAGTCTGAATCAATTTCGAAGTCATCCAACCAGAAAATTTGTTCAGAGTTGATGAAGAATTGGAAGATGAGAGGAGCATCAATAGAATAGGCATGCC
ACTGGAGTCTTGGAGAGCATGGACACTCAGAAAAGCCAACCTGAAAAGCAGTCTTCATCCGCTGCAACTGCCCCATCTGTTACTTCATGCCAAAAGAAGA
AGAATGAAGAAGCTGCTTTCTTAGACGATTTGAAGGATCACATTGACGAGTTTATTAAGGCTTCTATGGATGAGCACAAAAGTTGTTTCAAGAAAATAAT
TCAGAAGGTTGGTACCTAAAATTTGTTGAGAAAAATTATTCACATCACCTTCATCATTTGCCGATAAGGCATGGTTTTGGATCAATTTCAGATGTTTGGT
ATGTCCAAGACTGTTGCAGAAGGTCACTCCAATGCTTCCAAAGAAATTCAAAGTTCTCTGCATCTTCAGACAACTGTACAAGACTAGATTTCTTGCTTTT
GAACCACTAAATTTTAACTGAGGCATGTTACCACCCAGATATTTAGTTTTATATTAGGTTGTTTGAAACAAAATTTTGTTTGTGAAAACTCCATTCATGG
GTTGTTTTTGCCAGTATGGTTTCTATGCTTAAGTATTGTTGAATTATGGTAGCTTATCCAATTACTAAAGTGAGTCCCAACCACAATATACCCTTTTCCA
TTCCACCTATGTAGGATGTTGACATTGCATCACAATTTAGGATGTTGACATTGCACCAAAACTTGAAGACATTTATTTTCAAGTCAACATGTCTTGACAC
TGCACCAAAACTTCAATACAATTTTTCAGTGAGCACATTAGGATGCTCTGCTGCATTGAATAGCAC