Detailed information on CNT0001653 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P30124|HEM2_PEA, E-value = 3e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001653

Sequence

>CNT0001653
CACGCAGTGCTCCTACCCGACCATCCATCATATCACTAGGACTGACAACATCTGCTCCAGCTTGGGCCTTTTTGTAAATTAAAGAGACAAAAAAAATGTT
AGTGGTGTTATAGAGAAGTGTAGCAAGGAAACCTTAGAGATCGGGAACATAAAAGCATATTTCCTCAGTATACTCAACCATTAATTTCCCTAAAACTCAT
GGCAAAAAATTTACTTGCTGATAACTACAATAAAGCATCAGTTTTTTCATCTGGGAGTTGAGACACCATGTTGAACCCATTATTACATGAAACAAAATAC
ATCCACAAACAAAGGAAACTTATTTGAAAGTAAATGAACATTTCAAGGCCATACTGAAGGTGATCAATATGTTCAGTAAATCTTAAAAAAATAATTGGTA
ACTGCCTACAGTTGAAAATGTTTATAGAAGACAGTCATATGACCTGGGCTACAGCTTGTTTACATAGCTGATGAACTGTCTCATCATTCATAATAACTCC
TGCAGAATCATCTTCTCTAACTATGCCATCATGCCCATCTGATGAATAAGGATCTAATGCAAC

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G42670.2 Delta-aminolevulinic acid dehydratase, chloroplastic protein coding CNT0001653 1378 508 CDS Cis
GLYMA06G12110.1 Delta-aminolevulinic acid dehydratase protein coding CNT0001653 567 268 CDS Trans
GLYMA06G12110.1 Delta-aminolevulinic acid dehydratase protein coding CNT0001653 528 258 CDS Trans
GLYMA06G12110.2 Delta-aminolevulinic acid dehydratase protein coding CNT0001653 567 268 CDS Trans
GLYMA06G12110.2 Delta-aminolevulinic acid dehydratase protein coding CNT0001653 528 258 CDS Trans