Detailed information on CNT0001661 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q39013|NAC2_ARATH, E-value = 1e-86

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001661

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHHHSCMYVPLGCSFCERSDLHRRDDTRA*

>peptide 2 (38 aa)
MYVCTLRLFFLRTERSTSARRYSCMIQLLLSPFGAFPA*

Sequence

>CNT0001661
TCGGCTAACAACAACATCGCTGCTTGGTTGGAACTTCTCGATCGTGCCCTTCTTGTTGTAAATACGGCAAAGCACCCAATCATCTAACTGCATAATCGGA
AACCAACGTAAGATTAATTTAATCTCGCAGGCGGTGGCAGGTGAGAGTGATAAGAAGGAATAATTTCTAAAAATAGAAAGTGATAATTGCGATTTGGCAG
AAGATTTTATATTTTTAATTTTTTCTCTTTCCACATCAATTATTGTTTTTAATGCGATGGCTAAGTCTTCAACTGGTGAAGGTTCTGCGCGGTGAGATAA
CATTTAAGATATTACGGCCATAGATTTTGCAATTTGCATGGGAAATGATTATCATCCTCAGCTTCAACTTGAGGGCAAAGTCGTAATTTCATGCAATTAT
CCTATCCTAATAATCTTGAACTAGAAAGGGCATGCATCATCATTCATGTATGTATGTACCCTTAGGCTGTTCTTTTTGCGAACGGAGCGATCTACATCGG
CGAGACGATACTCGTGCATGATCCAATTGCTCTTGTCCCCTTTCGGAGCTTTCCCTGCGTAAAACACCAAAGCTTTTTTTATCCCAACCGGTTTGGGGTG
GCCAATGGGCTTATCCGCCCCGGTTGCCTTCCAGTAACCGGTTCCCGCCGCCCGGTTCGGCCTGGAACCGTTCGGGTATTTCCGGTCCCGTGGTGAAAAG
AAGTACCACTCTTTCTCTCCGTAGGAAGCCAATCCTGTACAATAACAATTCAAAAAATGAATGAATTAAGAATTAAGAATAAGAATATATCAGAAGTTGA
AGATAATGTTACCGGGTAGGTCCCAGGGGTCGTATTTGTAGAGGTCGATTTCGGCGATGATGGGAACGGCGATAGGCTGCGATGCGCATTTACGGCAGAG
ATAGTGCAACACCAGCTCCTGGTCCGTTGGATGGAATCTGAAGCCTGGGGGCAATTGAAGCTCCGATGCCATCTTAATGAATGAATAAACGCTTCCCCCT
ATATCCCTCCCTCGCTAGCTACACCAACT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G37590.2 Uncharacterized protein protein coding CNT0001661 96 147 CDS Trans
GLYMA04G42800.1 NAC domain protein; Uncharacterized protein protein coding CNT0001661 2966 1029 CDS_UTR Cis
GLYMA06G11970.1 Uncharacterized protein protein coding CNT0001661 1118 534 CDS_UTR Trans