Detailed information on CNT0001671 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001671

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.0460.6720.9442.2880.5990.1250.5881.0123.2793.8523.0313.6032.2711.7220.928leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MPDFCILQEPHSHDKVNIGGKIIPERRQGGFTAIVPTSRSGAPPEKDSCCSESTIKGVCLFCNLTFKYLTPFRVNYICRLPFFFKMLCIE*

>peptide 2 (86 aa)
MKNHSEIGKKYHCYDSHWEAQPIDHCVNNFFLTFQYFLINKDIGKEILTVLTIKPPPHLPLTLAFLKLYLPLSYLILFLQVPPYTD*

>peptide 3 (31 aa)
PQVSLSETSTTSLIPASQQPTLLPIDKHSST*

>peptide 4 (38 aa)
MTKKKSDFARNFLTSNLYSMRTKTSPNSSKTTFGSFKP*

Sequence

>CNT0001671
CCACAAGTATCTCTTTCAGAGACATCGACAACTAGCTTGATACCAGCAAGTCAACAACCAACTCTGTTACCAATTGATAAGCATTCAAGCACTTGACAAA
CCCACCTTTAAAAGCTAGCTATTAAGGGGGGAGAACCAAGCACTTAAATACTCCACTGAGCATCCTATACTACTTTGTGAGACTTAGGCACCCCATAATA
CCCAAGTCCCTATCAGATATGGGCATTGTTAGAAGCTAGAAAGACAACTCTTTGACCCGAAATTCTGGTTGGAATGTTGTATGACCAAGAAAAAAAGTGA
TTTTGCTAGAAATTTCCTGACAAGTAATTTATACTCTATGAGAACTAAAACTTCTCCAAATTCATCAAAAACAACATTTGGAAGCTTTAAACCATAACAA
AATTCTGGATTGAAAAAATTGAAATTGAAACTGAGTTGGTATGCATCACATTGTTCTGGTTTACTTGCTAGGAAAATGAAAAATCATAGTGAGATAGGAA
AAAAATATCATTGTTATGATTCACATTGGGAGGCACAACCAATTGATCACTGCGTGAATAATTTCTTTTTGACATTTCAATATTTTCTCATCAACAAAGA
CATTGGGAAAGAAATACTTACAGTACTGACTATAAAACCTCCACCACATCTTCCACTAACTCTAGCATTCCTGAAACTGTATCTGCCACTATCATATCTG
ATTCTCTTTCTACAAGTACCACCTTACACGGATTGAGCAAATTCAACATAGTTTTTACCATTCAGCTTTTGGATCAAAAACTGTAAGTTGATCTGATCCC
CCTTTTGTTTATTTTCCATTCTACATTCATTATGTAATTAGGCAGCCCTGCCTATATATGTATCTTTGTTATTTTTGAAATAATATACAAGTATTTTTCC
TTCCCTACATTTTTTCTCTCCTTAGCAATCCCTAAAATCACAGAAACCTAGCTGATGGAGAGAACATGCCAGATTTCTGCATCCTACAGGAGCCACACAG
CCATGACAAAGTGAACATAGGTGGCAAGATTATCCCTGAAAGAAGGCAAGGTGGCTTTACCGCGATTGTCCCCACGTCTAGGAGTGGAGCTCCTCCAGAA
AAAGATAGCTGCTGCTCTGAGTCAACAATAAAAGGCGTTTGTTTGTTTTGTAACCTTACATTTAAGTATTTAACACCATTTCGTGTAAATTATATTTGTA
GACTTCCATTTTTTTTTAAAATGTTGTGTATTGAATAAATTAATTTCAAAATATTGCAATACAAACTGAACCCGATCAAGAACTCCATCTAAAATGTATT
TTCTCTTATATCTGAAAAACACTGACATTACGTTATTCTGAATGAAACCGAGTTCAAATTTTATAACTAAGGTTTTAGATTTAAGTTTTATTGATAAAAA
AATATAATTGAAAAGAAAGT