Detailed information on CNT0001694 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0001694

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.10900.090.479000.103000.34300000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.0250.050.0750.10.1250.150.1750.20.2250.250.2750.30.3250.350.3750.40.4250.450.4750.50.…0.525

Sequence

>CNT0001694
TGAGAGTGATACCCATGCATGTGCTTACATGTTAGTACATGTTTAAAAACAAATGAAAATTGGAGTTTAAAAAGGAAAATATTTACTTAATTTTCAAATT
TAGTTAGGACGTATTAGGAGACAATCATGTAAAGGACGAGACAAGAAGGAAGTGTTGTGGGAGGAAAGAGGCAGAGCTGCAATCACCAGAGTGGAAGCGC
GAAACGGTAAACCCTAAACCCTGAATCCTGAACCTTGAACCTTGAACCTTGAACCCTGAACCCTGAACCCTCAAACCCTGAACACTGAACCCTGAACCCT
GAACCCTGAAACCCTCAACCCTCAACCCTCAACCCTCAACCCTCAACCCTCAACCCTAATCTTAAATACTATAAAATTGTTGAACTGAAACAGCCAAATT
ACAAAATGAAAAATGCATTCACAAATTAATAGTTGAAAAAGGCATAAAGAATGACAAAATCCTTAACTCCTTGACACAGTGCTGAAAATCACGTTTTTCT
AGCTTGTTTTTCTTCTGTTCCATCCGACTAGTAAGGCCCTGCATAAATGCAGCACTCATTACAGATTTACAATCAATAAGGATAAACTTATAATTCAAAC
ATTTCAAACCCAATATACACCCTACACCCTAAACCCCAAACCCTACACCCTACACCCTAATCTTAAATACTATAAAATTGTTGAACTGAAACAGCCAAAT
TACAAAATGAAAAATGCATTCACAAATTAATAATTGAAAAAGGCATAAAGAATGACAAAATCCTTAACTCCTTGACACAGTGCTGAAAATCATGTTTTTC
TAGCTTGTTTTTCTTCTGTTCCATCCGACTAGTAAGGCCCTGCATAAATGCAGCACTCATTACAGATTTACAATCAATAAGGATAAACTTATAATTCAAA
CATTTCAAACCCAATATATAATCCTATTACCTGTGCCATTTCATATAGTGGTTGGTAAATTGCAGCATTAATAGAGCATAGTTGTTGGAGCTCCATTATC
CAAAACATCTTCTTCATTATCCACACTGCTAGCATCACGAGTAATGTCCTCCATATTGCTGCAACCTGTAAGCATGTGAGGATCATTTCATAAAAAAAAA
ACACGAATAAACTATTGCCAAACTATACAAATTTTTCATTGAGCTCTACATTGGATAGCATGCAACTGATGGTTTGTGAAAGACATCCGGAATCCATATA
TTATCTAAAAAAATAAAATAAAGCAAGTTCAGTTTAACTGTAATTTTAGTACTGTTTCATTGACTTGGCAACTAAATAGAAAGAGAAGAGCAGCTCACTG
AGCTTCGTCGAAAATAACTATGCCTACTTTAATATCCACTTCCATTGGTGCCCAAAT

lncRNA-RNA interactions

Number of interactions: 20

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA03G42570.1 Uncharacterized protein protein coding CNT0001694 809 343 CDS_UTR Trans
GLYMA04G43720.1 Uncharacterized protein protein coding CNT0001694 973 363 CDS Cis
GLYMA04G43720.1 Uncharacterized protein protein coding CNT0001694 1588 596 CDS_UTR Cis
GLYMA04G43720.1 Uncharacterized protein protein coding CNT0001694 716 300 CDS Cis
GLYMA12G00200.1 Uncharacterized protein protein coding CNT0001694 849 343 CDS Trans
GLYMA12G00200.1 Uncharacterized protein protein coding CNT0001694 434 218 CDS Trans
GLYMA12G00200.1 Uncharacterized protein protein coding CNT0001694 241 140 CDS Trans
GLYMA14G39783.1 Uncharacterized protein protein coding CNT0001694 466 365 CDS Trans
GLYMA14G39783.1 Uncharacterized protein protein coding CNT0001694 487 307 CDS Trans
GLYMA14G39783.1 Uncharacterized protein protein coding CNT0001694 322 227 CDS Trans
GLYMA14G39783.2 Uncharacterized protein protein coding CNT0001694 466 365 CDS Trans
GLYMA14G39783.2 Uncharacterized protein protein coding CNT0001694 487 307 CDS Trans
GLYMA14G39783.2 Uncharacterized protein protein coding CNT0001694 322 227 CDS Trans
GLYMA14G39783.3 Uncharacterized protein protein coding CNT0001694 466 365 CDS Trans
GLYMA14G39783.3 Uncharacterized protein protein coding CNT0001694 487 307 CDS Trans
GLYMA14G39783.3 Uncharacterized protein protein coding CNT0001694 322 227 CDS Trans
GLYMA14G39783.4 Uncharacterized protein protein coding CNT0001694 466 365 CDS Trans
GLYMA14G39783.4 Uncharacterized protein protein coding CNT0001694 487 307 CDS Trans
GLYMA14G39783.4 Uncharacterized protein protein coding CNT0001694 322 227 CDS Trans
GLYMA15G00220.1 Uncharacterized protein protein coding CNT0001694 561 299 CDS Trans