Detailed information on CNT0001695 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001695

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKILNLLGILIACNLEMVLLTKFLWDDTMNLLTR*

>peptide 2 (61 aa)
MFLICKSVVWVVMLALLEISQGASAQPSCMVAVGQGCEAWWNARSNCKLSDNHAETDCQEL*

>peptide 3 (47 aa)
HQLMPFVMSTLEVWNSSEVYKTLALQLLWFGALKALINWFERLPPCF*

>peptide 4 (29 aa)
MPKRTVRSYEDSELAWNFDCLQFGNGFVN*

Sequence

>CNT0001695
CACCAACTTATGCCCTTTGTGATGTCCACATTGGAAGTATGGAATTCTAGTGAGGTTTATAAGACCTTGGCTCTCCAACTTTTGTGGTTTGGTGCTCTCA
AGGCGCTTATCAATTGGTTTGAGAGGCTCCCACCATGTTTCTGATCTGTAAATCAGTGGTGTGGGTGGTGATGCTGGCATTGCTTGAGATTAGTCAGGGG
GCTAGTGCACAGCCATCCTGCATGGTGGCCGTTGGCCAGGGCTGCGAAGCATGGTGGAATGCTAGATCCAATTGCAAGCTGAGCGACAACCATGCCGAAA
CGGACTGTCAGGAGTTATGAAGATTCTGAACTTGCTTGGAATTTTGATTGCTTGCAATTTGGAAATGGTTTTGTTAACTAAATTTTTATGGGATGACACT
ATGAACCTGTTAACTCGATGAACAGCATGATTTAACTACTTCTGTACAAAAATTTAAAACTAAACAATGATCCTTCTGTGTGAACTTGTTTGATCATCTG
CTAATACTATTTATTTCCTCGTAAGTATCCCGTGATACCACTCGTATACATTGCCATATGCTTCGACTCATTAATTGATGTCCAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA16G00373.1 Uncharacterized protein protein coding CNT0001695 100 74 CDS_UTR Trans