Detailed information on CNT0001696 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001696

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00.1780.18200000000.190.20700.610leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.65

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MKQQAKNIQTKIVNPKKKNHQEIFRVRDSDKVRKRLTTKMSAWKQNCCSWRFKTYFTNMGICIAVPKVLEFFFLHFLHARLKSLISLNL*

Sequence

>CNT0001696
GTAATATTTGTGCGGCATATTGGACACTCAGAACAAGCAAGTGAACAAGATTTACACACTGCAAGATGAAACAACAGGCTAAAAATATTCAGACAAAAAT
TGTAAATCCAAAAAAGAAAAATCACCAAGAAATTTTTAGGGTAAGAGATTCAGACAAAGTTAGGAAGAGACTTACAACAAAAATGTCGGCATGGAAGCAG
AATTGCTGCAGTTGGAGATTCAAAACATACTTTACAAACATGGGAATTTGCATCGCCGTTCCCAAGGTACTTGAGTTCTTTTTCCTTCATTTCTTGCATG
CGCGCCTGAAATCATTAATCTCACTGAATCTTTGAAGACCTTTCAGCATAAGTTATAAACTTTTGCAGTAAATATCAAAAAATTATTTGTTTTCTCAGAC
CTAACCATCCCCTGTCCAACAAATTCGAAAATTACAGAGATTGAAAGTTACACTCGGGTGTCTTAACAGTTTGAACATCTAGCAATATCTTTGATGTATG
TTAGAACATTTGAAGTGTCTCAAATGATCTATTAAGGCATCCATATTTCTTGATTTATTTCCTTAATTAGGATTAGTAAATCTTGTCATCTAAATGGATT
TAGGACTTGTATTCTGCACTTGACCATAATATAAACCAGAAACACAATTGCACGCTGCGAAAGCATCT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G01110.1 Uncharacterized protein protein coding CNT0001696 1494 555 CDS Cis
GLYMA06G01130.1 Uncharacterized protein protein coding CNT0001696 1015 454 CDS Trans
GLYMA07G19702.1 Uncharacterized protein protein coding CNT0001696 787 349 CDS Trans
GLYMA16G19330.1 Uncharacterized protein protein coding CNT0001696 761 349 CDS Trans