Detailed information on CNT0001701 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001701

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQSLLESLYVILQVPRLRDTPSWAFLVSSRW*

>peptide 2 (33 aa)
STYSLNYILDKLFDLRGYLIYFLVLDFLPLIYG*

>peptide 3 (43 aa)
MNSANMKDSNPNWKNSVCEGHWKNLIPCFFMHQEMILKPQSNQ*

Sequence

>CNT0001701
CAGTACATATTCCTTGAATTATATACTAGACAAATTATTTGATTTGAGGGGATATTTGATTTATTTCTTGGTTTTGGATTTTCTACCTTTAATTTATGGT
TAAATCAATATAAGTGCATACGAAGAAGAAGGGTGATTCTAAATCTAATTTGTTCTGAAATGCTACGGGAAGAAGCTTGATATGTACCAGCTGTCATACA
CTTACAGAGTTTCAGATCAAAGGACTTGGATAATGCCTTTGTCGTGCTAGATATCTAAACATTAGAAAATATCTGAATTCAACATTTTCAAGTTATTTAT
TTCAAAAAACATTAGAGGGTGAGGAACCCCAATTCACCCTCTGCCGGTCTCCATCTCGTTCTGGGCCTGCAGCATCACTTCGTGTAAATATTAGAGCAGG
AGAAGGAGATGAAGATGGCAAAACGAAACCACAAACTTCCTTGATTTGAGGCCAAGGATCCTCCTCACTAAAGCTAAGTTTCTCAGAAGTGTATTCTCTG
CTTTATTCGAATATGGGCCAAGCTTTTATACAGTGAGTTTACGCTTGCTACAGAGATCTAACAACTCTAACGGTTTCGTAACTGCTTACACTGTTGTAAC
TAACTAACCAAGGGCCTAACTAACTAACCCATGGTTCATACAAATCGTGACTTAACTATGCATGCATGCAGTCACTGCTTGAGTCGTTATATGTAATCCT
CCAAGTGCCTAGGTTGCGTGATACTCCTTCGTGGGCGTTCCTCGTGAGTTCCAGGTGGTGAATCTTCATTCCTGCTTCTGCTGCTAACACTGCTAACATA
TGATGCCAAGCTTCTATTTGCCTACCGAAGTAGTCACTTTGGTTGTTACTATCTCCATCGAGGAGTGAAAAAATAAAGAGAAGATTGTAAACTGCTTGAT
ACAGCCATACTTGACTTCATTATCAAGCAAATTTCAAAAGACTCCTAAACAACACAGAACAACGAACTGCTTCAGTGATTGCTGTTCAAAGCTCACTCCA
TTGATGATATCCATGTCTAAAGTGATTCACTTTGTAGTAGATTAATTATTTATGTAATTATGTGTATGAAAGTTAATTAGAGGGTCACAATCTTTCTATA
GGTGGTGCAGTACGCATTTGACAGTGGCAATGGTAAAACTGCATTCAATGATGTTGATGAATGCCTGAGGTATTATAATCAACTTCCTTATAAAAGATGC
ATGAATTAACTATCACAATTAGCCATTGAGCTATATGCTGTATAGAAATGAATTCTGCCAATATGAAAGATTCAAACCCCAACTGGAAGAATTCTGTCTG
TGAAGGTCACTGGAAGAACTTGATTCCTTGCTTCTTCATGCATCAAGAAATGATCCTGAAGCCTCAGTCAAATCAATGAAGACAAAAATCAATTCTGCCC
TTGGCGCTCTGGACAGGTGATTTGTGTAGTTTTTGTTGTTTTTCTTGCCCATAATATCCTTTCTGCCTCGTGCACATATTTCTCCTTGTGACATACCAAC
TTGGTGTATTTTTGGATATCAGTTCGAAGAGCTCAAAAATATTTTTATTCCTAATGTAGCAAAGTTTTCCTTGTTCATTTTATGTCTAGGAATTCAGAAA
TGTGCTAAGTTACATTTCCAACTTTTATCCAAACTTAGTCATGATGCACACATATAACTGAGAAAGACGTGATTCTTACTGAGCTTTGTGTTTCAGCCTC
TTACAAACCGTACCTTCAGATGTGCTGAGTAAAGGAGAGGTTATAGCTGATTCATACAGGGAACCGGAAGACGAGGAAACAGGGAGTTTGGACCCTGATT
TAAAGCAACTAGAATCAATACTATGAATACCTAACATACTTGCCGTTTCTGAGTAGCCACGATAGTTAAGACTTAAGACCATGGAACCTATGTTCCAAAG
GCAGAACCTTAAAACAAAAATAACATTGTGTATCGAAATATAAAAAAATTGTACGAGTCTATTACAATTTTTTCATAAAAAATTGTTTTTTTTTAAATAA
TCACTTTTAAAAGTTTTCCATGTTTTTATTTTAGTTTTTCAAAATAATCAGAAATGTAAAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA19G03350.1 Uncharacterized protein protein coding CNT0001701 270 197 CDS Trans