Detailed information on CNT0001709 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P30707|RL9_PEA, E-value = 4e-27

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0044952, E-value = 5e-08 (A. thaliana)

Expression of CNT0001709

Peptides detected in this lncRNA

>peptide 1 (33 aa)
CFQHLLFQYCSLLTNINAIEKFPDILLFNMAFL*

>peptide 2 (36 aa)
MRAQDLETSSMSFPSKINSSLTFSDRTTETPLRRSTF

Sequence

>CNT0001709
TTGTTTTCAACATCTACTCTTCCAGTATTGTTCCCTTCTCACTAACATAAATGCCATCGAGAAATTTCCTGATATCCTTCTTTTTAACATGGCATTTCTG
TAACAAACAAATAAATAAACAATTAATTAAACCCTAAACCAATACCAAAATTGAGAAAAAATTGTATGGAAACATGTGCATGGAGAAAGATTAAACCTGG
TTAATGAGAGCACAGGACCTAGAAACAAGTTCAATGTCGTTCCCATCCAAAATCAATTCATCTTTAACTTTTTCAGATCGAACAACGGAAACACCGTTAA
GAAGGTCCACTTTTC

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G40430.2 Uncharacterized protein protein coding CNT0001709 842 315 CDS_UTR Cis
GLYMA04G40470.1 Uncharacterized protein protein coding CNT0001709 666 321 CDS_UTR Trans
GLYMA06G14330.1 Uncharacterized protein protein coding CNT0001709 528 314 CDS_UTR Trans
GLYMA06G14350.1 Uncharacterized protein protein coding CNT0001709 538 314 CDS_UTR Trans
GLYMA06G14350.3 Uncharacterized protein protein coding CNT0001709 538 314 CDS_UTR Trans
GLYMA06G14360.1 Uncharacterized protein protein coding CNT0001709 498 314 CDS_UTR Trans
GLYMA11G32242.1 Uncharacterized protein protein coding CNT0001709 463 314 CDS_UTR Trans
GLYMA19G22231.1 Uncharacterized protein protein coding CNT0001709 430 266 CDS Trans