Detailed information on CNT0001714 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q19AV6|ZSWM7_HUMAN, E-value = 1e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001714

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.3720.1990.6100.4730.1490.1160.1090.3641.0690.5281.270.59800.825leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.21.31.4

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MSASSVVAETIWKEIESTHTVNDDHLWSLHFLFGKNFEGATRIVDLRGVSKISAHPSGRFIFQVTGESQRKDQYLCFAENFCACYSFFYDVVNRV*

>peptide 2 (39 aa)
MMLSTECKHQLAARLAASLGSYVEVKVSDEELAALLSKI*

>peptide 3 (80 aa)
MISGASLVDFFLDREQFIHKSVFGWAKVKTDEALKATYGGCSDIGFFFFNLFIKELVLAVTIPLDLFLTEKHFQVIPNFQ*

Sequence

>CNT0001714
TTTTCTTTTTTCATCCCGGTATCTTAGGTAATTACTTAACGCACCCATTTTTGCTTGATGCACCTCAAATTTTCTAATATTTCCTTTTTACCCTTCTTCT
TCCAAGCAAAAACCTAGCTTCCTCTCTCTGACCACCTCCTCCCTAAACCTTCACCGCGTGCGACCACCACCACTCACCCCCCCTTCCCTCCTTGTCGCAC
TGCCACCTCCTTCCACTAGATCCACGCGCGTCACCCAACCATTGACATCTTCAATCGTGCGACGTAGTCACCTACGCATCACCAAGATCTGCACACGCGA
CCGCTGCCACCTCCCTCCGCCGCGCGCGCAAGCCCTCTGCACACCAGATTCGCGTGCAACTTCACCTCGTTACCTCCGAGATATAGATTGCAGATTCGGA
ATTGGTCTTGGTTTGGTTGGTTGTCTCATTACTAAAATAAATACAGAATGAGTGCAAGCAGTGTGGTAGCAGAGACAATATGGAAGGAAATTGAATCTAC
ACACACAGTGAATGATGATCATCTTTGGAGTTTGCATTTCTTGTTTGGCAAGAACTTTGAGGGAGCCACTAGAATTGTTGACCTAAGAGGTGTCAGCAAG
ATATCTGCTCACCCCAGTGGAAGGTTTATCTTTCAGGTTACAGGTGAATCCCAAAGAAAAGACCAGTATCTTTGTTTTGCTGAAAACTTTTGCGCTTGTT
ATTCATTCTTCTATGATGTTGTCAACAGAGTGTAAACATCAATTAGCTGCTAGACTTGCTGCATCTTTGGGATCTTATGTTGAAGTTAAGGTGTCTGATG
AGGAGCTAGCTGCGTTACTATCCAAAATATAGCCTTTTCCTTGTATAAGAATAATTTATAATTTATTCAATATTGATTCTATGGAGCTGAACAAATCATT
TTTAGATTTTGTTAACAGTGATGATCTCAGGAGCCTCTTTGGTTGACTTTTTCTTAGATAGAGAGCAATTTATCCATAAAAGTGTGTTTGGATGGGCAAA
AGTAAAAACAGATGAAGCACTAAAAGCCACTTATGGTGGATGCTCTGACATTGGTTTTTTTTTTTTTAATCTTTTTATAAAAGAACTTGTACTAGCTGTC
ACAATTCCTTTGGATTTGTTTTTGACTGAGAAACATTTTCAGGTTATTCCAAATTTCCAATGAAATTAATGTTTGCAAGTTTTATTGGGAAACATTAT