Detailed information on CNT0001723 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6Z784|SPX2_ORYSJ, E-value = 6e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0001723

Peptides detected in this lncRNA

>peptide 1 (37 aa)
SQSIIPSLNLSVEHHTRLSNPHHFNFSLLSQLIQIIV*

>peptide 2 (54 aa)
MFISFLINIKYTRFEDKHEKIYVILVALASAVILFFNPLAIAKPSYAKEAMRKC*

>peptide 3 (31 aa)
MLTVELLPLISSKLRSADKTWSHTRLPQNPH*

>peptide 4 (33 aa)
MCFKALLLPNIALSLQRLQKATKTPTEIQNRIV*

>peptide 5 (29 aa)
MLFWLHWLVQLFYFSILLQSQSLVMQRRQ*

>peptide 6 (83 aa)
MFPVLCLSSPRTTPAPGIGKESNTNPKHIGVNYVFQGPIATKYRFVIAKAAKGNQNTNRNTKPNSVICADCDGNDNCLLILRG*

>peptide 7 (60 aa)
MQRAVLCSQCKGSGVNSVDIFNGQFKAGDTCWLCGGRKEMLCGNCNGTGFVGGFLSTYDQ*

>peptide 8 (33 aa)
MDSLKPVTRAGFAEAGRRCYAGIAMEQALLVAS*

>peptide 9 (90 aa)
MEPHSSSSKSSLIEDQSLVKRILSITSHSFTSLLSTSILKKGWFSTSWIKGKRSSAPVRLSYFFIIFTRPAQTFIIKPPPHNLITLSLCV*

Sequence

>CNT0001723
TCTCAATCCATTATTCCGTCCCTCAATTTGAGTGTGGAACACCACACCAGATTATCTAATCCTCACCACTTCAATTTCTCATTACTCAGCCAACTTATAC
AAATTATAGTCTAATTATACTTTAAATCTTCCAATGTTCCCTGTCCTGTGCCTAAGTTCTCCCAGAACTACACCAGCACCAGGTATTGGTAAAGAAAGTA
ATACAAACCCAAAGCATATTGGAGTCAATTATGTGTTTCAAGGCCCTATTGCTACCAAATATCGCTTTGTCATTGCAAAGGCTGCAAAAGGCAACCAAAA
CACCAACCGAAATACAAAACCGAATAGTGTGATTTGTGCTGATTGTGATGGAAATGATAATTGTCTTCTGATTTTACGTGGCTAGTAGATGCAAAGAGCT
GTTCTATGCTCTCAATGCAAAGGCAGTGGGGTGAACTCTGTTGATATTTTCAATGGACAGTTTAAAGCCGGTGACACGTGCTGGCTTTGCGGAGGCAGGA
AGGAGATGTTATGCGGGAATTGCAATGGAACAGGCTTTGTTGGTGGCTTCTTGAGCACTTATGATCAGTAGGATAAAAAGTCCTTGTAGCCATATGGAGG
CTCACACACACATGTATATTGTGTCTCTTTAAATACTTTCACTATGTTGATTTTATATTTGGAAATTCTTAGTTCACTTGTAGACATAGTGCCATAGTGG
TTGTTTAAAAATGAATAAATCAACAAACAGAAATATGTAGTAACATATTTGCCCCCATTCTGAACTGTGGTTAGCTGTCACAACACTCAACTTTTTGTTG
TTCCCTTGAGAATTTGATAGAGGGGATTAGTGAGATGACAATAGCAGCCGATAGATAAGGAAGCTTGGAAACAAAGTCTGCAGAGAAAACCAAATAGGGA
AAGAAAGATACAAGAAAATACTTGGACAAAGAAGGAAAGTTGATTCGGGTCAAAGCAACGAATAACAAGAAGGATGAAAACAAAAAACAAAAATAGAATA
AACAAACGTAGTTATCCCAATAGATACGGGGATACCTAAGAAACTAAACAATACTAGTAAGAAATAGCCATATATGAAGGTAATATAGATTAGTATGCAT
TGATATCCTTCTTTTGATTCATATGAAAATCTACCATTGAGACAGGGAAATGGATCCTCTTGTATAAATGACAAATCATGTCTAAATTCTATGTTTATTT
CTTTTCTAATAAACATTAAGTACACGAGATTTGAAGATAAACACGAGAAGATCTATGTTATTCTGGTTGCATTGGCTAGTGCAGTTATTTTATTTTTCAA
TCCTCTTGCAATCGCAAAGCCTAGTTATGCAAAGGAGGCAATGAGAAAATGCTAACAGTTGAGCTTCTACCCCTAATTTCTTCCAAGCTACGCAGTGCTG
ATAAAACATGGAGCCACACTCGTCTTCCTCAAAATCCTCACTAATTGAAGACCAGTCGTTGGTGAAAAGAATACTCAGTATCACCTCGCACTCCTTTACA
AGCTTGTTAAGCACATCAATTTTGAAGAAGGGCTGGTTCAGCACCTCTTGGATAAAAGGCAAGCGAAGCAGTGCACCGGTTCGCTTATCATATTTCTTTA
TTATCTTCACTAGACCTGCACAAACATTCATCATCAAACCCCCCCCTCATAATCTCATAACTCTATCTCTCTGTGTGTAAATATATTTAAAGGAAAGAAA
ACATGACAGATGCTAGTAATACATTCACGATATTCTCTTTTTAACTCACTCTCTACTATTGTTGGATTAAAT

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G07160.2 Uncharacterized protein protein coding CNT0001723 1018 367 CDS Cis
GLYMA04G07160.3 Uncharacterized protein protein coding CNT0001723 1018 367 CDS Cis
GLYMA06G07260.2 Uncharacterized protein protein coding CNT0001723 579 264 CDS Trans
GLYMA06G07260.2 Uncharacterized protein protein coding CNT0001723 579 237 CDS Trans
GLYMA06G07260.3 Uncharacterized protein protein coding CNT0001723 579 264 CDS Trans
GLYMA06G07260.3 Uncharacterized protein protein coding CNT0001723 579 237 CDS Trans
GLYMA10G40820.2 Uncharacterized protein protein coding CNT0001723 301 185 CDS Trans
GLYMA20G26490.1 Uncharacterized protein protein coding CNT0001723 319 190 CDS Trans